https://github.com/biocore/qiime
Official QIIME 1 software repository. QIIME 2 (https://qiime2.org) has succeeded QIIME 1 as of January 2018.
Science Score: 10.0%
This score indicates how likely this project is to be science-related based on various indicators:
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○CITATION.cff file
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○codemeta.json file
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○.zenodo.json file
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○DOI references
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○Academic publication links
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✓Committers with academic emails
19 of 72 committers (26.4%) from academic institutions -
○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (4.1%) to scientific vocabulary
Keywords
analysis
microbiome
Keywords from Contributors
bioinformatics
biplots
ordination
emperor
qiime
notebook
biom
sequence-alignment
metagenomics
metabarcoding
Last synced: 5 months ago
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JSON representation
Repository
Official QIIME 1 software repository. QIIME 2 (https://qiime2.org) has succeeded QIIME 1 as of January 2018.
Basic Info
Statistics
- Stars: 286
- Watchers: 56
- Forks: 263
- Open Issues: 397
- Releases: 0
Archived
Topics
analysis
microbiome
Created over 13 years ago
· Last pushed about 3 years ago
Metadata Files
Readme
Changelog
Contributing
License
README.md
QIIME: Quantitative Insights Into Microbial Ecology
QIIME 2 has succeeded QIIME 1 as of January 1, 2018. QIIME 1 is no longer officially supported, as our development and support efforts are now focused entirely on QIIME 2. For more information about what this means, see our blog post: QIIME 2 has succeeded QIIME 1.
QIIME 1 users should transition from QIIME 1 to QIIME 2. If you're new to QIIME, you should start by learning QIIME 2, not QIIME 1.
The QIIME 1 website can be found at http://www.qiime.org. For related software projects and data, see biocore.
Owner
- Name: biocore
- Login: biocore
- Kind: organization
- Location: Cyberspace
- Website: http://biocore.github.io/
- Repositories: 76
- Profile: https://github.com/biocore
Collaboratively developed bioinformatics software.
GitHub Events
Total
- Watch event: 3
- Fork event: 1
Last Year
- Watch event: 3
- Fork event: 1
Committers
Last synced: almost 3 years ago
All Time
- Total Commits: 6,538
- Total Committers: 72
- Avg Commits per committer: 90.806
- Development Distribution Score (DDS): 0.633
Top Committers
| Name | Commits | |
|---|---|---|
| Greg Caporaso | g****o@g****m | 2,401 |
| Jai Ram Rideout | j****t@g****m | 544 |
| Jesse Stombaugh | j****h@g****m | 484 |
| Justin Kuczynski | j****k@g****m | 273 |
| Antonio Gonzalez | a****a@g****m | 244 |
| Tony Walters | w****s@g****m | 221 |
| Yoshiki Vázquez Baeza | y****9@g****m | 210 |
| Will Van Treuren | W****n@c****u | 191 |
| Daniel McDonald | m****t@c****u | 185 |
| Jose Navas | j****a@g****m | 156 |
| charudatta-navare | c****e@g****m | 143 |
| Adam Robbins-Pianka | a****a@c****u | 143 |
| Dan Knights | d****s@g****m | 141 |
| Jens Reeder | j****r@g****m | 129 |
| Kyle Bittinger | k****r@g****m | 123 |
| Meg Pirrung | m****p@g****m | 116 |
| Rob Knight | r****t@c****u | 110 |
| Jenya Kopylova | j****v@g****m | 89 |
| Jose Carlos Clemente | j****e@g****m | 81 |
| Catherine Lozupone | l****e@c****u | 66 |
| Luke Ursell | l****l@g****m | 60 |
| Emily TerAvest | e****t@g****m | 53 |
| Sophie Weiss | s****5@c****u | 51 |
| johnjohnchase | l****n@g****m | 46 |
| Julia Goodrich | j****9@c****u | 39 |
| Jeremy Widmann | j****n@c****u | 34 |
| Jesse Zaneveld | z****d@g****m | 21 |
| David Soergel | d****v@d****m | 21 |
| mikerobeson | s****d@g****m | 20 |
| ebolyen | e****n@g****m | 18 |
| and 42 more... | ||
Committer Domains (Top 20 + Academic)
colorado.edu: 7
nau.edu: 2
cornell.edu: 1
davidsoergel.com: 1
ceinge.unina.it: 1
rl1-1-221-160-dhcp.int.colorado.edu: 1
qq.com: 1
uchicago.edu: 1
dn51p06l.sunet: 1
rockefeller.edu: 1
rhrk.uni-kl.de: 1
kloss.info: 1
iugrina.com: 1
delysid.org: 1
wlan-rooms-3538.sc13.org: 1
uj.edu.pl: 1
mail.med.upenn.edu: 1
rl1-2-199-151-dhcp.int.colorado.edu: 1
little-beast.gateway.2wire.net: 1
dhcp-uris-3023.redrover.cornell.edu: 1
ag-mi-3atg3qr.ag.cornell.edu: 1
Issues and Pull Requests
Last synced: over 1 year ago
All Time
- Total issues: 135
- Total pull requests: 63
- Average time to close issues: 3 months
- Average time to close pull requests: 3 months
- Total issue authors: 24
- Total pull request authors: 2
- Average comments per issue: 2.08
- Average comments per pull request: 4.3
- Merged pull requests: 51
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 0
- Pull requests: 0
- Average time to close issues: N/A
- Average time to close pull requests: N/A
- Issue authors: 0
- Pull request authors: 0
- Average comments per issue: 0
- Average comments per pull request: 0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
- gregcaporaso (104)
- arsilan324 (2)
- zachcp (2)
- ghost (1)
- KaiFeng007 (1)
- bwawrik (1)
- santhoshnh (1)
- shanikumarpatel (1)
- Newman-Wang (1)
- hallerliran (1)
- wentyqq (1)
- AlliKoehle (1)
- andso17 (1)
- nicey1995 (1)
- jdhenaos (1)
Pull Request Authors
- gregcaporaso (62)
- zachcp (1)
Top Labels
Issue Labels
enhancement (67)
bug (31)
quick fix (3)
question (3)
project management (2)
documentation addition (2)
testing (2)
waiting-for-merge (1)
website (1)
Pull Request Labels
enhancement (1)
Dependencies
setup.py
pypi
- biom-format *
- burrito *
- burrito-fillings *
- cogent *
- emperor *
- gdata *
- matplotlib *
- natsort *
- numpy *
- pandas *
- pynast *
- qcli *
- qiime-default-reference *
- scikit-bio *
- scipy *