https://github.com/biodataanalysisgroup/elixir-bfsp-odyssey
Exploring Molecular Biodiversity: An Interactive R Shiny App Approach
Science Score: 49.0%
This score indicates how likely this project is to be science-related based on various indicators:
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○CITATION.cff file
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✓codemeta.json file
Found codemeta.json file -
✓.zenodo.json file
Found .zenodo.json file -
✓DOI references
Found 1 DOI reference(s) in README -
✓Academic publication links
Links to: zenodo.org -
○Academic email domains
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○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (7.3%) to scientific vocabulary
Keywords
Repository
Exploring Molecular Biodiversity: An Interactive R Shiny App Approach
Basic Info
Statistics
- Stars: 4
- Watchers: 0
- Forks: 5
- Open Issues: 17
- Releases: 0
Topics
Metadata Files
README.md
Odyssey
Odyssey is an R shiny application for the exploration of Molecular Biodiversity in Greece.
Table of Contents
Installation
```r
install.packages("remotes")
remotes::install_github("BiodataAnalysisGroup/ELIXIR-BFSP-Odyssey") ```
Usage
```r
library(Odyssey)
Odyssey::run_odyssey() ```
Contributing
If you would like to contribute to this pipeline, please see the Contribution Guidelines.
License
This work, as a whole, is licensed under the MIT license.
The code contained in this website is simultaneously available under the MIT license; this means that you are free to use it in your own packages, as long as you cite the source.
Please also refer to CODE OF CONDUCT.
Related_Publications
- N. Pechlivanis, A. Anastasiadou, A. Papageorgiou, E. Pafilis, and F. Psomopoulos, “Odyssey: an Interactive R Shiny App Approach to explore Molecular Biodiversity in Greece,” 23rd European Conference On Computational Biology (ECCB24), Sep. 2024, doi: 10.5281/ZENODO.14186452.
Owner
- Name: Biodata Analysis Group
- Login: BiodataAnalysisGroup
- Kind: organization
- Email: fpsom@certh.gr
- Website: https://biodataanalysisgroup.github.io/
- Repositories: 17
- Profile: https://github.com/BiodataAnalysisGroup
GitHub Events
Total
- Issues event: 25
- Watch event: 2
- Issue comment event: 12
- Member event: 10
- Push event: 18
- Pull request review comment event: 4
- Pull request review event: 8
- Pull request event: 27
- Fork event: 4
- Create event: 1
Last Year
- Issues event: 25
- Watch event: 2
- Issue comment event: 12
- Member event: 10
- Push event: 18
- Pull request review comment event: 4
- Pull request review event: 8
- Pull request event: 27
- Fork event: 4
- Create event: 1
Issues and Pull Requests
Last synced: 6 months ago
All Time
- Total issues: 19
- Total pull requests: 17
- Average time to close issues: about 1 month
- Average time to close pull requests: 9 days
- Total issue authors: 3
- Total pull request authors: 3
- Average comments per issue: 0.0
- Average comments per pull request: 0.29
- Merged pull requests: 6
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 19
- Pull requests: 17
- Average time to close issues: about 1 month
- Average time to close pull requests: 9 days
- Issue authors: 3
- Pull request authors: 3
- Average comments per issue: 0.0
- Average comments per pull request: 0.29
- Merged pull requests: 6
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
- npechl (16)
- natanast (2)
- larsgr (1)
Pull Request Authors
- natanast (9)
- npechl (7)
- paulzierep (1)
Top Labels
Issue Labels
Pull Request Labels
Dependencies
- bslib * imports
- data.table * imports
- echarts4r * imports
- htmltools * imports
- leaflet * imports
- lubridate * imports
- reactable * imports
- scales * imports
- shiny * imports
- stringr * imports
- actions/checkout v3 composite
- r-lib/actions/check-r-package v2 composite
- r-lib/actions/setup-pandoc v2 composite
- r-lib/actions/setup-r v2 composite
- r-lib/actions/setup-r-dependencies v2 composite