https://github.com/bioinfo-pf-curie/geniac-demo - version-3.3.0

version-3.3.0 01/10/2025

NEW FEATURES - use readPaths instead of samplePlan - use NFTools library - update with geniac version-3.6.0

BUGFIX - Update conda env dependencies due to modification in some python libraries

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Published by phupe over 1 year ago

https://github.com/bioinfo-pf-curie/geniac-demo - version-3.2.0

version-3.2.0 09/08/2023

NEW FEATURES - upgrade with nextflow DSL2 - update with geniac version-3.2.0 - add support to the new profile 'apptainer' - set memory for outputDocumentation process to 2500MB - set memory for glad process to lowMem

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Published by phupe almost 3 years ago

https://github.com/bioinfo-pf-curie/geniac-demo - version-3.1.0

version-3.1.0 08/14/2023

NEW FEATURES - update with geniac version-3.1.0 - set memory for outputDocumentation process to 1500MB - update GLAD with Bioconductor 3.17

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Published by phupe almost 3 years ago

https://github.com/bioinfo-pf-curie/geniac-demo - version-3.0.0

version-3.0.0 05/05/2023

NEW FEATURES - update with geniac version-3.0.0 - specificBinds option removed and singularityRunOptions set as empty by default

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Published by phupe about 3 years ago

https://github.com/bioinfo-pf-curie/geniac-demo - version-2.6.3

version-2.6.3 01/06/2023

NEW FEATURES - update with geniac version-2.6.3 - Move the test profile file in first position in the nextflow.config file - Geniac sudmodule set to use the last version from the release branch on github

DOCUMENTATION - Use '--remote-submodules' option with 'git clone' to pull last geniac submodule version

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Published by phupe over 3 years ago

https://github.com/bioinfo-pf-curie/geniac-demo - version-2.6.2

version-2.6.2 12/16/2022

NEW FEATURES - update with geniac version-2.6.2

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Published by phupe over 3 years ago

https://github.com/bioinfo-pf-curie/geniac-demo - version-2.6.1

version-2.6.1 12/09/2022

NEW FEATURES - update with geniac version-2.6.1

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Published by phupe over 3 years ago

https://github.com/bioinfo-pf-curie/geniac-demo - version-2.6.0

version-2.6.0 11/19/2022

NEW FEATURES - update with geniac version-2.6.0

BUGFIX - outDir var defined as absolute path

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Published by phupe over 3 years ago

https://github.com/bioinfo-pf-curie/geniac-demo - version-2.5.0

version-2.5.0 06/08/2022

NEW FEATURES - update with geniac version-2.5.0

- C
Published by phupe almost 4 years ago

https://github.com/bioinfo-pf-curie/geniac-demo - version-2.4.1

version-2.4.1 06/10/2022

NEW FEATURES - update with geniac version-2.4.1

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Published by phupe about 4 years ago

https://github.com/bioinfo-pf-curie/geniac-demo - version-2.4.0

version-2.4.0 06/08/2022

NEW FEATURES - update with geniac version-2.4.0

- C
Published by phupe about 4 years ago

https://github.com/bioinfo-pf-curie/geniac-demo - version-2.3.0

version-2.3.0 05/23/2022

NEW FEATURES - new profile: podman - update with geniac version-2.3.0

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Published by phupe about 4 years ago

https://github.com/bioinfo-pf-curie/geniac-demo - version-2.2.0

version-2.2.0 04/27/2022

NEW FEATURES - example with a tool based on R and renv - update with geniac version-2.2.0

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Published by phupe about 4 years ago

https://github.com/bioinfo-pf-curie/geniac-demo - version-2.1.0

version-2.1.0 03/25/2022

NEW FEATURES - update with geniac version-2.1.0 - new option: params.containers.specificBinds

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Published by phupe about 4 years ago

https://github.com/bioinfo-pf-curie/geniac-demo - version-2.0.1

version-2.0.1 03/18/2022

NEW FEATURES - update with geniac version-2.0.1

- C
Published by phupe about 4 years ago

https://github.com/bioinfo-pf-curie/geniac-demo - version-2.0.0

version-2.0.0 02/10/2021

NEW FEATURES - update with geniac version-2.0.0 - put source code in modules/fromSource, delete helloWorld.sh not needed anymore with new geniac version

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Published by phupe over 4 years ago

https://github.com/bioinfo-pf-curie/geniac-demo - version-1.0.0

version-1.0.0 31/05/2021

NEW FEATURES - update with geniac version-1.0.0

- C
Published by phupe about 5 years ago

https://github.com/bioinfo-pf-curie/geniac-demo - version-0.2.2

version-0.2.2 21/05/2021

BUG FIXES - In the dependencies section of the file trickSoftware.yml, pip has been added

NEW FEATURES - update with geniac version-0.2.3

- C
Published by phupe about 5 years ago

https://github.com/bioinfo-pf-curie/geniac-demo - version-0.2.1

version-0.2.1 20/05/2021

NEW FEATURES - update with geniac version-0.2.2

BUG FIXES - params.geniac.containers.git must not be empty

- C
Published by phupe about 5 years ago

https://github.com/bioinfo-pf-curie/geniac-demo - version-0.2.0

version-0.2.0 19/05/2021

NEW FEATURES - New default values for singularityRunOptions and dockerRunOptions - update with geniac version-0.2.1

- C
Published by phupe about 5 years ago

https://github.com/bioinfo-pf-curie/geniac-demo - version-0.1.2

version-0.1.2 12/11/2020

BUG FIXES - set params.geniac.path to 'path/bin' instead of 'path'

- C
Published by phupe about 5 years ago

https://github.com/bioinfo-pf-curie/geniac-demo - version-0.1.1

version-0.1.1 11/25/2020

NEW FEATURES - new labels for resource tuning - update with geniac version-0.1.1

- C
Published by phupe over 5 years ago

https://github.com/bioinfo-pf-curie/geniac-demo - version-0.1.0

version-0.1.0 11/05/2020

First release of the geniac demo pipeline

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Published by phupe over 5 years ago