https://github.com/bioinfo-pf-curie/proteinfold - v1.6.2

v1.6.2 18/07/2025 BUGFIXES

AlphaFold3:

Resolve bug when option --num_seeds : erreur to addresse the content of alphafold3Options to bash variable (Issue #102)

- Nextflow
Published by QuentinDuvertCurie 11 months ago

https://github.com/bioinfo-pf-curie/proteinfold - v1.6.1

v1.6.1 06/06/2025 BUGFIXES - AlphaBrige: * add the files generated by Alphabridge in bin/apgenerateyaml4plots.sh to display graphs in MultiQC (Issue #100) - python-env: * defaults -> nodefaults

- Nextflow
Published by QuentinDuvertCurie 12 months ago

https://github.com/bioinfo-pf-curie/proteinfold - v1.6.0

v1.6.0 05/20/2025

NEW FEATURES - AlphaFold3: * Add AlphaBridge in multiqc report (Issue #92) * Seed parallelization (Issue #90) - AfMassive: * Added a default value of false for launchAfMassive (Issue #88) - Error added if option --random_seed not provided for AlphaFold2, afMassive, ColabFold (Issue #87)

BUGFIXES - Test added for onlyMsas (Issue #89) - Added command test in Admin.md (Issue #89) - Resolve error for onlyMsas (Issue #89) - Added Json or Fasta Checker result to foldSearch processes to respect script order (Issue #79) - DiffDock: * no longer recalculates .npy files on each run (Issue #95) - AlphaFold3: * Resolve bug when len modelSeeds = 1 and numSeeds is None (Issue #98)

DOCUMENTATION - git setting for HuggingFace (NanoBert) (Issue #93)

- Nextflow
Published by QuentinDuvertCurie about 1 year ago

https://github.com/bioinfo-pf-curie/proteinfold - v1.5.0

v1.5.0 01/24/2025

NEW FEATURES - AlphaFold3 updated with v3.0.1

- Nextflow
Published by phupe over 1 year ago

https://github.com/bioinfo-pf-curie/proteinfold - v1.4.0

v1.4.0 01/13/2025

NEW FEATURES - AlphaFold3 - Bootstrap using Docker containers on Docker Hub 4geniac

BUGFIXES - Remove double-quotes for boolean parameter in json files - Numpy forced to version 1.26.4 in nanoBERT container

DOCUMENTATION - Detail outputs and explain how the different annotations must be installed - Examples of different channels patterns explained in the nextflow code

- Nextflow
Published by phupe over 1 year ago