https://github.com/bioinfomachinelearning/dips-plus - 1.3.0

• Version 1.3 of DIPS-Plus includes (1) a new Graphein-based complex featurization pipeline; (2) per-residue (scalar) disorder propensities as predicted by flDPnn; (3) structure-based training and validation splits using FoldSeek; and (4) PDB metadata derived for each chain in DIPS-Plus using Graphein's PDBManager API.
• A new supplementary Zenodo record is now associated with this repository (DOI: 10.5281/zenodo.8140981). This provides the new data corresponding to points (2), (3), and (4) above.

- Python
Published by amorehead almost 3 years ago

https://github.com/bioinfomachinelearning/dips-plus - 1.2.0

• Version 1.2 of DIPS-Plus includes new Jupyter notebooks showing users how to featurize PDB file inputs and how to train new deep learning models for protein interface prediction using the feature set provided by DIPS-Plus.
• A new Zenodo record is now associated with this repository (DOI: 10.5281/zenodo.8071136). This provides supplementary data containing (1) new residue-level annotations of intrinsic disorder regions (IDRs) and (2) raw multiple sequence alignments for each supervised chain in DIPS-Plus, generated using Jackhmmer and AlphaFold's small version of the Big Fantastic Database (BFD). Included with (1) are also versions of each DIPS-Plus pruned pair representation in the HDF5 file format (i.e., .hdf5 file equivalents), to make it simple for users to work with these pair representations in whatever programming language one would like to use.

- Python
Published by amorehead almost 3 years ago

https://github.com/bioinfomachinelearning/dips-plus - 1.1.0

This release coincides with the release of DeepInteract.

- Python
Published by amorehead over 4 years ago