https://github.com/bioinfotongli/workflow-segmentation

Host: GitHub
Owner: BioinfoTongLI
Language: Python
Default Branch: master
Size: 112 KB

This score indicates how likely this project is to be science-related based on various indicators:

○
CITATION.cff file
✓
codemeta.json file
Found codemeta.json file
○
.zenodo.json file
○
DOI references
○
Academic publication links
○
Academic email domains
○
Institutional organization owner
○
JOSS paper metadata
○
Scientific vocabulary similarity
Low similarity (3.6%) to scientific vocabulary

Last synced: 9 months ago · JSON representation

Repository

Created almost 4 years ago · Last pushed almost 2 years ago

Readme

Make sure nextflow, conda and singularity are in the PATH.

git pull this repo
Go to interactive session (you will need access to imaging queue): bsub -q imaging -n1 -M6000 -R"select[mem>6000] rusage[mem=6000]" -Is $SHELL
Run bash [path-to-this-repo]/lsf_run [path-to-yaml-config], in a folder where you have write permission

containers/Dockerfile docker