https://github.com/biojulia/geneticvariation.jl
Datastructures and algorithms for working with genetic variation
Science Score: 10.0%
This score indicates how likely this project is to be science-related based on various indicators:
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○CITATION.cff file
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○codemeta.json file
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○.zenodo.json file
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○DOI references
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○Academic publication links
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✓Committers with academic emails
1 of 5 committers (20.0%) from academic institutions -
○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (15.7%) to scientific vocabulary
Keywords
Keywords from Contributors
Repository
Datastructures and algorithms for working with genetic variation
Basic Info
Statistics
- Stars: 43
- Watchers: 9
- Forks: 18
- Open Issues: 11
- Releases: 8
Topics
Metadata Files
README.md
GeneticVariation
Description
GeneticVariation provides types and methods for working with datasets of genetic variation. It provides a VCF and BCF parser, as well as methods for working with variation in sequences such as evolutionary distance computation, and counting different mutation types.
Installation
Install GeneticVariation from the Julia REPL:
julia
using Pkg
add("GeneticVariation")
If you are interested in the cutting edge of the development, please check out the master branch to try new features before release.
Testing
GeneticVariation is tested against julia 1.X.Y on Linux, OS X,
and Windows.
| PackageEvaluator | Latest Build Status |
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Contributing
We appreciate contributions from users including reporting bugs, fixing issues, improving performance and adding new features.
Take a look at the CONTRIBUTING file provided with every BioJulia package package for detailed contributor and maintainer guidelines.
Financial contributions
We also welcome financial contributions in full transparency on our open collective. Anyone can file an expense. If the expense makes sense for the development of the community, it will be "merged" in the ledger of our open collective by the core contributors and the person who filed the expense will be reimbursed.
Backers & Sponsors
Thank you to all our backers and sponsors!
Love our work and community? Become a backer.
Does your company use BioJulia? Help keep BioJulia feature rich and healthy by sponsoring the project Your logo will show up here with a link to your website.
Questions?
If you have a question about contributing or using BioJulia software, come on over and chat to us on the Julia Slack workspace, or you can try the Bio category of the Julia discourse site.
Owner
- Name: BioJulia
- Login: BioJulia
- Kind: organization
- Website: https://biojulia.dev
- Repositories: 79
- Profile: https://github.com/BioJulia
Bioinformatics and Computational Biology in Julia
GitHub Events
Total
- Watch event: 2
- Issue comment event: 4
- Pull request event: 1
- Fork event: 1
Last Year
- Watch event: 2
- Issue comment event: 4
- Pull request event: 1
- Fork event: 1
Committers
Last synced: 8 months ago
Top Committers
| Name | Commits | |
|---|---|---|
| Ben J. Ward | w****0@g****m | 41 |
| Ciarán O’Mara | C****a@u****u | 3 |
| Rasmus Henningsson | r****n@g****m | 2 |
| Morten Piibeleht | m****t@g****m | 1 |
| femtocleaner[bot] | f****] | 1 |
Committer Domains (Top 20 + Academic)
Issues and Pull Requests
Last synced: 8 months ago
All Time
- Total issues: 18
- Total pull requests: 18
- Average time to close issues: over 1 year
- Average time to close pull requests: 2 months
- Total issue authors: 13
- Total pull request authors: 5
- Average comments per issue: 1.78
- Average comments per pull request: 1.78
- Merged pull requests: 16
- Bot issues: 0
- Bot pull requests: 1
Past Year
- Issues: 0
- Pull requests: 1
- Average time to close issues: N/A
- Average time to close pull requests: N/A
- Issue authors: 0
- Pull request authors: 1
- Average comments per issue: 0
- Average comments per pull request: 3.0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
- gtollefson (4)
- biona001 (2)
- jakobnissen (2)
- apraga (1)
- yuehhua (1)
- marbeno (1)
- kaskarn (1)
- dialvarezs (1)
- kavir1698 (1)
- tkelman (1)
- SabrinaJaye (1)
- jackmo375 (1)
- pfarndt (1)
Pull Request Authors
- SabrinaJaye (14)
- abhinavsns (2)
- rasmushenningsson (1)
- femtocleaner[bot] (1)
- mortenpi (1)
Top Labels
Issue Labels
Pull Request Labels
Packages
- Total packages: 1
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Total downloads:
- julia 7 total
- Total dependent packages: 3
- Total dependent repositories: 8
- Total versions: 2
juliahub.com: GeneticVariation
Datastructures and algorithms for working with genetic variation
- Documentation: https://docs.juliahub.com/General/GeneticVariation/stable/
- License: MIT
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Latest release: 0.4.1
published almost 3 years ago
Rankings
Dependencies
- Automa 0.7
- BGZFStreams *
- BioCore 2.0.5
- BioSequences 0.8.0
- BufferedStreams *
- Combinatorics *
- IntervalTrees 1.0.0
- Twiddle *
- julia 0.7
- IntervalTrees *
- YAML *