https://github.com/biojulia/biosequences.jl
Biological sequences for the julia language
Science Score: 36.0%
This score indicates how likely this project is to be science-related based on various indicators:
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○CITATION.cff file
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✓codemeta.json file
Found codemeta.json file -
✓.zenodo.json file
Found .zenodo.json file -
○DOI references
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○Academic publication links
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✓Committers with academic emails
3 of 24 committers (12.5%) from academic institutions -
○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (13.4%) to scientific vocabulary
Keywords
Keywords from Contributors
Repository
Biological sequences for the julia language
Basic Info
- Host: GitHub
- Owner: BioJulia
- License: mit
- Language: Julia
- Default Branch: master
- Homepage: http://biojulia.dev/BioSequences.jl
- Size: 4.3 MB
Statistics
- Stars: 159
- Watchers: 14
- Forks: 48
- Open Issues: 24
- Releases: 34
Topics
Metadata Files
README.md
BioSequences
Description
BioSequences provides data types and methods for common operations with biological sequences, including DNA, RNA, and amino acid sequences.
Installation
You can install BioSequences from the julia
REPL. Press ] to enter pkg mode, and enter the following:
julia
add BioSequences
If you are interested in the cutting edge of the development, please check out the master branch to try new features before release.
Testing
BioSequences is tested against Julia 1.X on Linux, OS X, and Windows.
Contributing
We appreciate contributions from users including reporting bugs, fixing issues, improving performance and adding new features.
Take a look at the contributing files detailed contributor and maintainer guidelines, and code of conduct.
Backers & Sponsors
Thank you to all our backers and sponsors!
Questions?
If you have a question about contributing or using BioJulia software, come on over and chat to us on the Julia Slack workspace, or you can try the Bio category of the Julia discourse site.
Owner
- Name: BioJulia
- Login: BioJulia
- Kind: organization
- Website: https://biojulia.dev
- Repositories: 79
- Profile: https://github.com/BioJulia
Bioinformatics and Computational Biology in Julia
GitHub Events
Total
- Create event: 4
- Commit comment event: 10
- Release event: 3
- Issues event: 13
- Watch event: 7
- Issue comment event: 53
- Push event: 37
- Pull request review comment event: 23
- Pull request review event: 8
- Pull request event: 32
- Fork event: 3
Last Year
- Create event: 4
- Commit comment event: 10
- Release event: 3
- Issues event: 13
- Watch event: 7
- Issue comment event: 53
- Push event: 37
- Pull request review comment event: 23
- Pull request review event: 8
- Pull request event: 32
- Fork event: 3
Committers
Last synced: 11 months ago
Top Committers
| Name | Commits | |
|---|---|---|
| Jakob Nybo Nissen | j****n@g****m | 136 |
| Ben J. Ward | w****0@g****m | 55 |
| Ben J. Ward | b****d@p****m | 43 |
| Kenta Sato | b****5@g****m | 23 |
| Ciarán O'Mara | C****a@u****u | 9 |
| Cameron Prybol | c****l@g****m | 7 |
| Ciarán O’Mara | c****n@o****u | 5 |
| Kevin Bonham | k****m@g****m | 3 |
| github-actions[bot] | 4****] | 3 |
| Tony Kelman | t****y@k****t | 2 |
| Kevin Bonham | k****n@b****h | 1 |
| Camilo García | c****2@u****o | 1 |
| Dave T. Johnson | d****e@d****t | 1 |
| Harry Scholes | h****s | 1 |
| Isaac Virshup | i****p@g****m | 1 |
| Jorge Fernandez-de-Cossio-Diaz | c****o | 1 |
| Morten Piibeleht | m****t@g****m | 1 |
| Peter Haverty | p****y@a****u | 1 |
| Thomas Poulsen | t****s@l****k | 1 |
| Tim Holy | t****y@g****m | 1 |
| femtocleaner[bot] | f****] | 1 |
| kdyrhage | k****e@g****m | 1 |
| lhnguyen-vn | 5****n | 1 |
| tanhevg | t****g | 1 |
Committer Domains (Top 20 + Academic)
Issues and Pull Requests
Last synced: 11 months ago
All Time
- Total issues: 56
- Total pull requests: 107
- Average time to close issues: 3 months
- Average time to close pull requests: about 1 month
- Total issue authors: 23
- Total pull request authors: 11
- Average comments per issue: 3.29
- Average comments per pull request: 2.28
- Merged pull requests: 87
- Bot issues: 0
- Bot pull requests: 4
Past Year
- Issues: 10
- Pull requests: 16
- Average time to close issues: 18 days
- Average time to close pull requests: 2 days
- Issue authors: 3
- Pull request authors: 2
- Average comments per issue: 1.5
- Average comments per pull request: 1.63
- Merged pull requests: 14
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
- jakobnissen (30)
- ammonite (2)
- fpmenninger (2)
- BeastyBlacksmith (2)
- SabrinaJaye (2)
- TransGirlCodes (1)
- BioTurboNick (1)
- EvoArt (1)
- chelate (1)
- ctarn (1)
- JuliaTagBot (1)
- JokingHero (1)
- kescobo (1)
- CiaranOMara (1)
- pdimens (1)
Pull Request Authors
- jakobnissen (98)
- SabrinaJaye (10)
- CiaranOMara (9)
- github-actions[bot] (4)
- camilogarciabotero (2)
- adienes (2)
- kescobo (1)
- timholy (1)
- cossio (1)
- cjprybol (1)
- TransGirlCodes (1)
Top Labels
Issue Labels
Pull Request Labels
Packages
- Total packages: 1
-
Total downloads:
- julia 799 total
- Total dependent packages: 32
- Total dependent repositories: 51
- Total versions: 25
juliahub.com: BioSequences
Biological sequences for the julia language
- Homepage: http://biojulia.dev/BioSequences.jl
- Documentation: https://docs.juliahub.com/General/BioSequences/stable/
- License: MIT
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Latest release: 3.5.0
published 11 months ago
Rankings
Dependencies
- actions/checkout v2 composite
- julia-actions/setup-julia v1 composite
- actions/checkout v2 composite
- julia-actions/julia-buildpkg latest composite
- julia-actions/setup-julia v1 composite
- JuliaRegistries/TagBot v1 composite
- actions/checkout v2 composite
- codecov/codecov-action v1 composite
- julia-actions/julia-processcoverage v1 composite
- julia-actions/julia-runtest latest composite
- julia-actions/setup-julia v1 composite