https://github.com/biojulia/automa.jl

A julia code generator for regular expressions

Science Score: 36.0%

This score indicates how likely this project is to be science-related based on various indicators:

○
CITATION.cff file
✓
codemeta.json file
Found codemeta.json file
✓
.zenodo.json file
Found .zenodo.json file
○
DOI references
○
Academic publication links
✓
Committers with academic emails
3 of 12 committers (25.0%) from academic institutions
○
Institutional organization owner
○
JOSS paper metadata
○
Scientific vocabulary similarity
Low similarity (11.1%) to scientific vocabulary

Keywords

julia regular-expression

Keywords from Contributors

programming-language numerical julialang ecology tabular-data dataframes data-frame biology cryptography ida

Last synced: 5 months ago · JSON representation

Repository

A julia code generator for regular expressions

Basic Info

Host: GitHub
Owner: BioJulia
License: other
Language: Julia
Default Branch: master
Homepage:
Size: 2.45 MB

Statistics

Stars: 192
Watchers: 14
Forks: 16
Open Issues: 9
Releases: 28

Topics

julia regular-expression

Created about 9 years ago · Last pushed about 1 year ago

Metadata Files

Readme Changelog License

Automa.jl

Automa is a regex-to-Julia compiler. By compiling regex to Julia code in the form of Expr objects, Automa provides facilities to create efficient and robust regex-based lexers, tokenizers and parsers using Julia's metaprogramming capabilities. You can view Automa as a regex engine that can insert arbitrary Julia code into its input matching process, which will be executed when certain parts of the regex matches an input.

Schema of Automa.jl

Automa is designed to generate very efficient code to scan large text data, often much faster than handcrafted code.

For more information read the documentation, or read the examples below and in the examples/ directory in this repository.

Examples

Validate some text is composed only of ASCII alphanumeric characters

```julia using Automa

generatebuffervalidator(:validate_alphanumeric, re"[a-zA-Z0-9]*") |> eval

for s in ["abc", "aU81m", "!,>"] println("$s is alphanumeric? $(isnothing(validate_alphanumeric(s)))") end ```

Making a lexer

```julia using Automa

tokens = [ :identifier => re"[A-Za-z][0-9A-Za-z!]*", :lparens => re"(", :rparens => re")", :comma => re",", :quot => re"\"", :space => re"[\t\f ]+", ]; @eval @enum Token errortoken $(first.(tokens)...) make_tokenizer((errortoken, [Token(i) => j for (i,j) in enumerate(last.(tokens))] )) |> eval

collect(tokenize(Token, """(alpha, "beta15")""")) ```

Make a simple TSV file parser

```julia using Automa

machine = let name = onexit!(onenter!(re"[^\t\r\n]+", :mark), :name) field = onexit!(onenter!(re"[^\t\r\n]+", :mark), :field) nameline = name * rep('\t' * name) record = onexit!(field * rep('\t' * field), :record) compile(nameline * re"\r?\n" * record * rep(re"\r?\n" * record) * rep(re"\r?\n")) end

actions = Dict( :mark => :(pos = p), :name => :(push!(headers, String(data[pos:p-1]))), :field => quote nfields += 1 push!(fields, String(data[pos:p-1])) end, :record => quote nfields == length(headers) || error("Malformed TSV") n_fields = 0 end )

@eval function parsetsv(data) headers = String[] fields = String[] pos = nfields = 0 $(generate_code(machine, actions)) (headers, reshape(fields, length(headers), :)) end

header, data = parse_tsv("a\tabc\n12\t13\r\nxyc\tz\n\n") ```

Owner

Name: BioJulia
Login: BioJulia
Kind: organization

Website: https://biojulia.dev
Repositories: 79
Profile: https://github.com/BioJulia

Bioinformatics and Computational Biology in Julia

GitHub Events

Total

Create event: 1
Commit comment event: 2
Issues event: 2
Release event: 1
Watch event: 2
Issue comment event: 8
Push event: 5
Pull request review event: 1
Pull request event: 5
Fork event: 1

Last Year

Create event: 1
Commit comment event: 2
Issues event: 2
Release event: 1
Watch event: 2
Issue comment event: 8
Push event: 5
Pull request review event: 1
Pull request event: 5
Fork event: 1

Committers

Last synced: 8 months ago

All Time

Total Commits: 327
Total Committers: 12
Avg Commits per committer: 27.25
Development Distribution Score (DDS): 0.453

Past Year

Commits: 8
Committers: 3
Avg Commits per committer: 2.667
Development Distribution Score (DDS): 0.375

Top Committers

Name	Email	Commits
Kenta Sato	b**5@g**m	179
Jakob Nybo Nissen	j**n@g**m	126
Kevin Bonham	k**m@g**m	6
Ben J. Ward	w**0@g**m	5
Ciarán O'Mara	C**a@u**u	2
SundaraRaman R	s**r@a**n	2
nhz2	n**2@c**u	2
=	=	1
Daniel C. Jones	d**s@c**u	1
Elliot Saba	s**t@g**m	1
denshd	7****d	1
femtocleaner[bot]	f****]	1

Committer Domains (Top 20 + Academic)

cs.washington.edu: 1 cornell.edu: 1 abiteasier.in: 1 utas.edu.au: 1

Issues and Pull Requests

Last synced: 6 months ago

All Time

Total issues: 47
Total pull requests: 73
Average time to close issues: 7 months
Average time to close pull requests: about 1 month
Total issue authors: 14
Total pull request authors: 12
Average comments per issue: 2.17
Average comments per pull request: 1.73
Merged pull requests: 67
Bot issues: 0
Bot pull requests: 2

Past Year

Issues: 1
Pull requests: 4
Average time to close issues: N/A
Average time to close pull requests: about 2 hours
Issue authors: 1
Pull request authors: 2
Average comments per issue: 2.0
Average comments per pull request: 1.0
Merged pull requests: 3
Bot issues: 0
Bot pull requests: 0

View more stats

Top Authors

Issue Authors

jakobnissen (31)
Kolaru (4)
jtrakk (1)
Azzaare (1)
richardreeve (1)
andreypopp (1)
sjoelund (1)
tlienart (1)
lesshaste (1)
cmcaine (1)
jagot (1)
racinmat (1)
SabrinaJaye (1)
JuliaTagBot (1)

Pull Request Authors

jakobnissen (44)
bicycle1885 (15)
kescobo (3)
SabrinaJaye (3)
nhz2 (2)
femtocleaner[bot] (2)
digital-carver (2)
richiejp (1)
denshd (1)
dcjones (1)
CiaranOMara (1)
macd (1)

Top Labels

Issue Labels

enhancement (4) bug (2) Out of scope (1) question (1) wontfix (1) future (1)

Pull Request Labels

enhancement (1) Documentation (1)

Packages

Total packages: 1
Total downloads:
- julia 4,275 total

Total dependent packages: 19
Total dependent repositories: 18
Total versions: 12

juliahub.com: Automa

A julia code generator for regular expressions

Documentation: https://docs.juliahub.com/General/Automa/stable/
License: MIT
Latest release: 1.1.0
published over 1 year ago

Versions: 12
Dependent Packages: 19
Dependent Repositories: 18
Downloads: 4,275 Total

Rankings

Dependent repos count: 2.0%

Dependent packages count: 4.0%

Stargazers count: 4.4%

Average: 4.8%

Forks count: 8.7%

Last synced: 6 months ago

Dependencies

.github/workflows/Documentation.yml actions

actions/checkout v2 composite
julia-actions/julia-buildpkg latest composite
julia-actions/julia-docdeploy latest composite

.github/workflows/Downstream.yml actions

actions/checkout v2 composite
julia-actions/julia-buildpkg latest composite
julia-actions/setup-julia v1 composite

.github/workflows/TagBot.yml actions

JuliaRegistries/TagBot v1 composite

.github/workflows/UnitTests.yml actions

actions/checkout v2 composite
codecov/codecov-action v1 composite
julia-actions/julia-processcoverage v1 composite
julia-actions/julia-runtest latest composite
julia-actions/setup-julia v1 composite

https://github.com/biojulia/automa.jl

Science Score: 36.0%

Keywords

Keywords from Contributors

Repository

Basic Info

Statistics

Topics

Metadata Files

README.md

Automa.jl

Examples

Validate some text is composed only of ASCII alphanumeric characters

Making a lexer

Make a simple TSV file parser

Owner

GitHub Events

Total

Last Year

Committers

All Time

Past Year

Top Committers

Committer Domains (Top 20 + Academic)

Issues and Pull Requests

All Time

Past Year

Top Authors

Issue Authors

Pull Request Authors

Top Labels

Issue Labels

Pull Request Labels

Packages

juliahub.com: Automa

Rankings

Dependencies