Data

Tools

Indexes

Applications

Experiments

Open Source Science

https://github.com/biojulia/sequencevariation.jl

Biological sequence variation

https://github.com/biojulia/sequencevariation.jl

Science Score: 10.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ○
    codemeta.json file
  • ○
    .zenodo.json file
  • ○
    DOI references
  • ✓
    Academic publication links
    Links to: zenodo.org
  • ○
    Committers with academic emails
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (16.2%) to scientific vocabulary

Keywords

biojulia biological-sequences biology variant-calling
Last synced: 6 months ago · JSON representation

Repository

Biological sequence variation

Basic Info
Statistics
  • Stars: 9
  • Watchers: 3
  • Forks: 3
  • Open Issues: 5
  • Releases: 8
Topics
biojulia biological-sequences biology variant-calling
Created almost 5 years ago · Last pushed almost 3 years ago
Metadata Files
Readme Changelog License

README.md

SequenceVariation

Project Status: WIP – Initial development is in progress, but there has not yet been a stable, usable release suitable for the public. Latest Release MIT license Stable documentation Latest documentation DOI

This project follows the semver pro forma and uses the OneFlow branching model.

Description

SequenceVariation provides a Julia vocabulary for comparing genetic mutations within biological sequences.

Installation

You can install SequenceVariation from the Julia REPL. Press ] to enter pkg mode, and enter the following:

julia add SequenceVariation

Testing

SequenceVariation is tested against Julia 1.6 (LTS), 1.X (release) and nightly on Linux.

Latest build status:

Unit Tests Documentation codecov Aqua QA

Contributing

We appreciate contributions from users including reporting bugs, fixing issues, improving performance and adding new features.

Take a look at the contributing files for detailed contributor and maintainer guidelines, and code of conduct.

Financial contributions

We also welcome financial contributions in full transparency on our open collective. Anyone can file an expense. If the expense makes sense for the development the core contributors and the person who filed the expense will be reimbursed.

Backers & Sponsors

Thank you to all our backers and sponsors!

Love our work and community? Become a backer.

backers

Does your company use BioJulia? Help keep BioJulia feature rich and healthy by sponsoring the project. Your logo will show up here with a link to your website.

Questions?

If you have a question about contributing or using BioJulia software, come on over and chat to us on the Julia Slack workspace, or you can try the Bio category of the Julia discourse site.

Owner

  • Name: BioJulia
  • Login: BioJulia
  • Kind: organization

Bioinformatics and Computational Biology in Julia

GitHub Events

Total
  • Issues event: 1
  • Watch event: 1
  • Issue comment event: 2
Last Year
  • Issues event: 1
  • Watch event: 1
  • Issue comment event: 2

Committers

Last synced: 8 months ago

All Time
  • Total Commits: 155
  • Total Committers: 2
  • Avg Commits per committer: 77.5
  • Development Distribution Score (DDS): 0.052
Past Year
  • Commits: 0
  • Committers: 0
  • Avg Commits per committer: 0.0
  • Development Distribution Score (DDS): 0.0
Top Committers
Name Email Commits
Thomas A. Christensen II 2****X 147
Jakob Nybo Nissen j****n@g****m 8

Issues and Pull Requests

Last synced: 6 months ago

All Time
  • Total issues: 15
  • Total pull requests: 28
  • Average time to close issues: 22 days
  • Average time to close pull requests: 9 days
  • Total issue authors: 3
  • Total pull request authors: 2
  • Average comments per issue: 1.47
  • Average comments per pull request: 1.21
  • Merged pull requests: 25
  • Bot issues: 0
  • Bot pull requests: 2
Past Year
  • Issues: 1
  • Pull requests: 0
  • Average time to close issues: N/A
  • Average time to close pull requests: N/A
  • Issue authors: 1
  • Pull request authors: 0
  • Average comments per issue: 0.0
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
  • MillironX (13)
  • ljournot (1)
  • JuliaTagBot (1)
Pull Request Authors
  • MillironX (26)
  • github-actions[bot] (2)
Top Labels
Issue Labels
enhancement (3) help wanted (1) question (1)
Pull Request Labels

Packages

  • Total packages: 1
  • Total downloads:
    • julia 4 total
  • Total dependent packages: 1
  • Total dependent repositories: 0
  • Total versions: 8
juliahub.com: SequenceVariation

Biological sequence variation

  • Versions: 8
  • Dependent Packages: 1
  • Dependent Repositories: 0
  • Downloads: 4 Total
Rankings
Dependent repos count: 9.9%
Average: 30.0%
Forks count: 33.3%
Stargazers count: 37.7%
Dependent packages count: 38.9%
Last synced: 6 months ago

Dependencies

.github/workflows/Documentation.yml actions
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.github/workflows/TagBot.yml actions
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.github/workflows/UnitTests.yml actions
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  • julia-actions/julia-processcoverage v1 composite
  • julia-actions/julia-runtest v1 composite
  • julia-actions/setup-julia v1 composite
.github/workflows/linting.yml actions
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  • julia-actions/setup-julia v1 composite
.github/workflows/register.yml actions
  • julia-actions/RegisterAction latest composite