https://github.com/biojulia/bioalignments.jl - v3.1.0

BioAlignments v3.1.0

Diff since v3.0.0

Merged pull requests: - Grantham's substitution matrix (#88) (@KaparaNewbie) - Release v3.1.0 (#89) (@MillironX)

- Julia
Published by github-actions[bot] about 3 years ago

https://github.com/biojulia/bioalignments.jl - v3.0.0

BioAlignments v3.0.0

Diff since v2.3.0

Closed issues: - ref2seq returns a position outside of the sequence length (#56)

Merged pull requests: - Update the alignment figure (#62) (@alyst) - Add support for 'meta' alignment operations (OP_PAD and OP_HARD_CLIP) (#64) (@MillironX) - Add getter methods (and forwarded getter methods) for alignment types (#83) (@MillironX) - Release v2.3.0 (#85) (@MillironX) - Release v3.0.0 (#86) (@MillironX)

- Julia
Published by github-actions[bot] over 3 years ago

https://github.com/biojulia/bioalignments.jl - v2.3.0

BioAlignments v2.3.0

Diff since v2.2.0

Closed issues: - Outdated documentation for SAM/BAM in BioAlignments is first hit in search (#82)

Merged pull requests: - Hotfix/2.2.0 (#76) (@CiaranOMara)

- Julia
Published by github-actions[bot] over 3 years ago

https://github.com/biojulia/bioalignments.jl - v2.2.0

BioAlignments v2.2.0

Diff since v2.1.0

Closed issues: - TagBot not triggering. (#67) - Do these methods work and are they tested? (#74)

Merged pull requests: - Add more SubstitutionMatrix operations (#60) (@timholy) - Add downstream tests (#70) (@CiaranOMara) - Add ssh key to TagBot workflow (#71) (@CiaranOMara) - BioSequences v3 and BioSymbols v5 (#72) (@CiaranOMara) - Housekeeping (#77) (@CiaranOMara) - Doctests (#78) (@CiaranOMara)

- Julia
Published by github-actions[bot] over 3 years ago

https://github.com/biojulia/bioalignments.jl - v2.1.0

BioAlignments v2.1.0

Diff since v2.0.1

Closed issues: - Lack of an article to cite BioAlignments.jl (#65)

- Julia
Published by github-actions[bot] about 4 years ago

https://github.com/biojulia/bioalignments.jl - v2.0.1 zenodo release

- Julia
Published by kescobo about 4 years ago

https://github.com/biojulia/bioalignments.jl - v2.0.0

BioAlignments v2.0.0

Diff since v1.0.1

Merged pull requests: - Release/v2.0.0 (#41) (@CiaranOMara)

- Julia
Published by github-actions[bot] about 6 years ago

https://github.com/biojulia/bioalignments.jl - Patch update

- Julia
Published by TransGirlCodes about 6 years ago

https://github.com/biojulia/bioalignments.jl - The julia v0.7 / v1.0 release

- Julia
Published by TransGirlCodes over 7 years ago

https://github.com/biojulia/bioalignments.jl - Version 3 - Long CIGAR support

Added

• Contributing files were added to this project.
• A method called BAM.ispositivestrand is added to test for the relevant flag in BAM records. Thanks @phaverty :smile:
• Support for records with CIGAR strings with >65535 op-codes has been added.

Changed

• Documentation has been updated and uses the Documenter.jl native html generator.

- Julia
Published by TransGirlCodes over 7 years ago

https://github.com/biojulia/bioalignments.jl - Drop julia 0.5 support

This release drops support for versions of julia lower than 0.6.

- Julia
Published by TransGirlCodes over 8 years ago

https://github.com/biojulia/bioalignments.jl - Initial Release

Move code out from Bio.jl's Bio.Align module.

- Julia
Published by TransGirlCodes over 8 years ago