https://github.com/biojulia/bed.jl

https://github.com/biojulia/bed.jl

Science Score: 23.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • CITATION.cff file
  • codemeta.json file
    Found codemeta.json file
  • .zenodo.json file
  • DOI references
  • Academic publication links
  • Committers with academic emails
    1 of 3 committers (33.3%) from academic institutions
  • Institutional organization owner
  • JOSS paper metadata
  • Scientific vocabulary similarity
    Low similarity (17.9%) to scientific vocabulary

Keywords

bed-format bioinformatics

Keywords from Contributors

interpretability biology standardization parsing animal hack autograder numeric biojulia report
Last synced: 6 months ago · JSON representation

Repository

Basic Info
  • Host: GitHub
  • Owner: BioJulia
  • License: mit
  • Language: Julia
  • Default Branch: develop
  • Size: 268 KB
Statistics
  • Stars: 6
  • Watchers: 9
  • Forks: 6
  • Open Issues: 6
  • Releases: 5
Topics
bed-format bioinformatics
Created over 7 years ago · Last pushed over 1 year ago
Metadata Files
Readme Funding License

README.md

BED.jl

Project Status: Active – The project has reached a stable, usable state and is being actively developed. Latest Release MIT license Stable documentation Latest documentation

This project follows the semver pro forma and uses the git-flow branching model.

Description

BED provides I/O and utilities for the BED file format.

Installation

You can install the BED package from the Julia REPL. Press ] to enter pkg mode, then enter the following command: julia add BED

If you are interested in the cutting edge of the development, please check out the develop branch to try new features before release.

Testing

BED is tested against Julia 1.X on Linux, OS X, and Windows.

Latest build status:

Unit Tests Documentation codecov

Contributing

We appreciate contributions from users including reporting bugs, fixing issues, improving performance and adding new features.

Take a look at the contributing files detailed contributor and maintainer guidelines, and code of conduct.

Financial contributions

We also welcome financial contributions in full transparency on our open collective. Anyone can file an expense. If the expense makes sense for the development the core contributors and the person who filed the expense will be reimbursed.

Backers & Sponsors

Thank you to all our backers and sponsors!

Love our work and community? Become a backer.

backers

Does your company use BioJulia? Help keep BioJulia feature rich and healthy by sponsoring the project. Your logo will show up here with a link to your website.

Questions?

If you have a question about contributing or using BioJulia software, come on over and chat to us on the Julia Slack workspace, or you can try the Bio category of the Julia discourse site.

Owner

  • Name: BioJulia
  • Login: BioJulia
  • Kind: organization

Bioinformatics and Computational Biology in Julia

GitHub Events

Total
  • Issue comment event: 1
  • Pull request review event: 4
  • Pull request review comment event: 2
  • Pull request event: 1
  • Fork event: 1
Last Year
  • Issue comment event: 1
  • Pull request review event: 4
  • Pull request review comment event: 2
  • Pull request event: 1
  • Fork event: 1

Committers

Last synced: 8 months ago

All Time
  • Total Commits: 41
  • Total Committers: 3
  • Avg Commits per committer: 13.667
  • Development Distribution Score (DDS): 0.171
Past Year
  • Commits: 4
  • Committers: 1
  • Avg Commits per committer: 4.0
  • Development Distribution Score (DDS): 0.0
Top Committers
Name Email Commits
Ciarán O'Mara C****a@u****u 34
Jakob Nybo Nissen j****n@g****m 4
github-actions[bot] 4****] 3
Committer Domains (Top 20 + Academic)

Issues and Pull Requests

Last synced: 6 months ago

All Time
  • Total issues: 7
  • Total pull requests: 19
  • Average time to close issues: 14 days
  • Average time to close pull requests: 2 months
  • Total issue authors: 6
  • Total pull request authors: 6
  • Average comments per issue: 4.71
  • Average comments per pull request: 0.68
  • Merged pull requests: 9
  • Bot issues: 0
  • Bot pull requests: 8
Past Year
  • Issues: 2
  • Pull requests: 3
  • Average time to close issues: N/A
  • Average time to close pull requests: 4 minutes
  • Issue authors: 1
  • Pull request authors: 2
  • Average comments per issue: 2.0
  • Average comments per pull request: 0.33
  • Merged pull requests: 2
  • Bot issues: 0
  • Bot pull requests: 0
Top Authors
Issue Authors
  • abhinavsns (2)
  • rulixxx (1)
  • jonathanBieler (1)
  • Emiller88 (1)
  • JuliaTagBot (1)
  • lysogeny (1)
Pull Request Authors
  • github-actions[bot] (8)
  • jakobnissen (8)
  • CiaranOMara (3)
  • jonathanBieler (2)
  • abhinavsns (2)
  • gitter-badger (1)
Top Labels
Issue Labels
enhancement (2) I/O (1) formats (1)
Pull Request Labels
enhancement (2)

Packages

  • Total packages: 1
  • Total downloads:
    • julia 80 total
  • Total dependent packages: 1
  • Total dependent repositories: 0
  • Total versions: 6
juliahub.com: BED
  • Versions: 6
  • Dependent Packages: 1
  • Dependent Repositories: 0
  • Downloads: 80 Total
Rankings
Dependent repos count: 9.9%
Dependent packages count: 23.0%
Forks count: 24.5%
Average: 25.6%
Stargazers count: 45.1%
Last synced: 6 months ago

Dependencies

.github/workflows/CompatHelper.yml actions
.github/workflows/Documentation.yml actions
  • actions/checkout v2 composite
  • julia-actions/julia-buildpkg v1 composite
  • julia-actions/julia-docdeploy v1 composite
.github/workflows/TagBot.yml actions
  • JuliaRegistries/TagBot v1 composite
.github/workflows/UnitTests.yml actions
  • actions/checkout v3 composite
  • codecov/codecov-action v4 composite
  • julia-actions/julia-processcoverage latest composite
  • julia-actions/julia-runtest latest composite
  • julia-actions/setup-julia latest composite