Data

Tools

Indexes

Applications

Experiments

Open Source Science

https://github.com/biojulia/biogenerics.jl

Generic methods, types and modules for the BioJulia ecosystem.

https://github.com/biojulia/biogenerics.jl

Science Score: 23.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ○
    .zenodo.json file
  • ○
    DOI references
  • ○
    Academic publication links
  • ✓
    Committers with academic emails
    1 of 3 committers (33.3%) from academic institutions
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (16.8%) to scientific vocabulary

Keywords from Contributors

sam-file smith-waterman-alignment sequence-analysis sequence-alignment high-throughput-sequencing dna-sequences bam-format bam-files parsing file-format
Last synced: 11 months ago · JSON representation

Repository

Generic methods, types and modules for the BioJulia ecosystem.

Basic Info
  • Host: GitHub
  • Owner: BioJulia
  • License: mit
  • Language: Julia
  • Default Branch: master
  • Homepage:
  • Size: 65.4 KB
Statistics
  • Stars: 12
  • Watchers: 6
  • Forks: 4
  • Open Issues: 3
  • Releases: 2
Created over 7 years ago · Last pushed about 2 years ago
Metadata Files
Readme Changelog License

README.md

BioGenerics

Latest Release MIT license Stable Latest Pkg Status Chat

Description

BioGenerics provides generic methods and modules used in many of the other BioJulia packages. IO, exceptions, and other types and methods used by all BioJulia packages are defined here.

Installation

You can install BioGenerics from the julia REPL. Press ] to enter pkg mode again, and enter the following:

julia add BioGenerics

If you are interested in the cutting edge of the development, please check out the master branch to try new features before release.

Testing

BioGenerics is tested against Julia 1.X on Linux, OS X, and Windows.

Build Status Build status Codecov

Contributing

We appreciate contributions from users including reporting bugs, fixing issues, improving performance and adding new features.

Take a look at the contributing files detailed contributor and maintainer guidelines, and code of conduct.

Financial contributions

We also welcome financial contributions in full transparency on our open collective. Anyone can file an expense. If the expense makes sense for the development of the community, it will be "merged" in the ledger of our open collective by the core contributors and the person who filed the expense will be reimbursed.

Backers & Sponsors

Thank you to all our backers and sponsors!

Love our work and community? Become a backer.

backers

Does your company use BioJulia? Help keep BioJulia feature rich and healthy by sponsoring the project Your logo will show up here with a link to your website.

Questions?

If you have a question about contributing or using BioJulia software, come on over and chat to us on Gitter, or you can try the Bio category of the Julia discourse site.

Owner

  • Name: BioJulia
  • Login: BioJulia
  • Kind: organization

Bioinformatics and Computational Biology in Julia

GitHub Events

Total
Last Year

Committers

Last synced: about 1 year ago

All Time
  • Total Commits: 39
  • Total Committers: 3
  • Avg Commits per committer: 13.0
  • Development Distribution Score (DDS): 0.308
Past Year
  • Commits: 4
  • Committers: 1
  • Avg Commits per committer: 4.0
  • Development Distribution Score (DDS): 0.0
Top Committers
Name Email Commits
Ben J. Ward b****d@p****m 27
Jakob Nybo Nissen j****n@g****m 10
Ciarán O'Mara C****a@u****u 2
Committer Domains (Top 20 + Academic)
utas.edu.au: 1

Issues and Pull Requests

Last synced: 11 months ago

All Time
  • Total issues: 3
  • Total pull requests: 15
  • Average time to close issues: 8 months
  • Average time to close pull requests: 2 months
  • Total issue authors: 3
  • Total pull request authors: 3
  • Average comments per issue: 1.33
  • Average comments per pull request: 1.93
  • Merged pull requests: 12
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 0
  • Pull requests: 0
  • Average time to close issues: N/A
  • Average time to close pull requests: N/A
  • Issue authors: 0
  • Pull request authors: 0
  • Average comments per issue: 0
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
  • CiaranOMara (1)
  • SabrinaJaye (1)
  • jakobnissen (1)
Pull Request Authors
  • jakobnissen (12)
  • CiaranOMara (3)
  • SabrinaJaye (2)
Top Labels
Issue Labels
Pull Request Labels
feature (1)

Packages

  • Total packages: 1
  • Total downloads:
    • julia 1,030 total
  • Total dependent packages: 14
  • Total dependent repositories: 0
  • Total versions: 6
juliahub.com: BioGenerics

Generic methods, types and modules for the BioJulia ecosystem.

  • Versions: 6
  • Dependent Packages: 14
  • Dependent Repositories: 0
  • Downloads: 1,030 Total
Rankings
Dependent packages count: 5.1%
Dependent repos count: 9.9%
Average: 18.4%
Forks count: 24.5%
Stargazers count: 34.1%
Last synced: 11 months ago