Data

Tools

Indexes

Applications

Experiments

Open Source Science

https://github.com/biojulia/biojuliadocs

https://github.com/biojulia/biojuliadocs

Science Score: 26.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ○
    DOI references
  • ○
    Academic publication links
  • ○
    Committers with academic emails
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (14.0%) to scientific vocabulary

Keywords from Contributors

julialang ecology biology genomics bioinformatics biojulia fastq fastq-files fastq-format sam-files
Last synced: 11 months ago · JSON representation

Repository

Basic Info
  • Host: GitHub
  • Owner: BioJulia
  • License: mit
  • Language: Julia
  • Default Branch: main
  • Size: 2.14 MB
Statistics
  • Stars: 6
  • Watchers: 2
  • Forks: 3
  • Open Issues: 5
  • Releases: 0
Created about 3 years ago · Last pushed over 1 year ago
Metadata Files
Readme Contributing License Code of conduct Codeowners

README.md

BioJuliaDocs

Note: This landing site is under extensive development and will receive frequent updates. It is not in a ready state, and is published under GitHub Pages only for testing purposes.

GitHub Pages status Static Badge

Description

The BioJuliaDocs initiative is an in-development project to produce a landing site for BioJulia similar to SciMLDocs (see the production page here).

Testing

The rendered BioJuliaDocs site, for testing purposes, is published online using GitHub Pages at biojulia.dev/BioJuliaDocs. A GitHub action rebuilds the site on every successful pull request.

To deploy the site locally, open two separate julia processes, and activate the "docs/" project. Then, in the first, run:

```julia

Make sure you are within or are pointing to the the docs/ folder

using LiveServer servedocs(; foldername=pwd()) ```

And in the other, run:

```julia using DocumenterVitepress

DocumenterVitepress.devdocs("build"; mdoutput_path="") ```

Open the LocalHost Url spawned by the vitepress process

Contributing

We appreciate contributions from users/members of the BioJulia commmunity including reporting bugs/typos, fixing issues, and adding new sections. This is a fantastic opportunity to polish one's technical writing skills as well as show off one's skill with BioJulia packages ;)

Take a look at the contributing files detailed contributor and maintainer guidelines, and code of conduct.

Questions?

Feel free to open a new discussion under the BioJuliaDocs Discussions section. Alternatively, one can chat with the community either via the Slack #biology workspace or in the forums.

This project is lead by Michael Persico (him/il) as part of a Julia Summer of Code project. Feel free to contact me directly should you wish to address any concerns privately.

Owner

  • Name: BioJulia
  • Login: BioJulia
  • Kind: organization

Bioinformatics and Computational Biology in Julia

GitHub Events

Total
  • Create event: 3
  • Issues event: 5
  • Watch event: 1
  • Delete event: 1
  • Member event: 2
  • Issue comment event: 10
  • Push event: 21
  • Pull request review comment event: 7
  • Pull request event: 13
  • Pull request review event: 11
  • Fork event: 2
Last Year
  • Create event: 3
  • Issues event: 5
  • Watch event: 1
  • Delete event: 1
  • Member event: 2
  • Issue comment event: 10
  • Push event: 21
  • Pull request review comment event: 7
  • Pull request event: 13
  • Pull request review event: 11
  • Fork event: 2

Committers

Last synced: about 1 year ago

All Time
  • Total Commits: 44
  • Total Committers: 4
  • Avg Commits per committer: 11.0
  • Development Distribution Score (DDS): 0.386
Past Year
  • Commits: 14
  • Committers: 3
  • Avg Commits per committer: 4.667
  • Development Distribution Score (DDS): 0.429
Top Committers
Name Email Commits
Michael Persico m****o@g****m 27
Kevin Bonham k****n@b****h 10
Anshul Singhvi a****i@g****m 5
Kevin Bonham k****m@g****m 2
Committer Domains (Top 20 + Academic)
bonham.ch: 1

Issues and Pull Requests

Last synced: 11 months ago

All Time
  • Total issues: 9
  • Total pull requests: 22
  • Average time to close issues: 25 days
  • Average time to close pull requests: about 2 months
  • Total issue authors: 2
  • Total pull request authors: 3
  • Average comments per issue: 0.78
  • Average comments per pull request: 0.82
  • Merged pull requests: 16
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 5
  • Pull requests: 13
  • Average time to close issues: less than a minute
  • Average time to close pull requests: 5 days
  • Issue authors: 1
  • Pull request authors: 3
  • Average comments per issue: 0.0
  • Average comments per pull request: 0.23
  • Merged pull requests: 7
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
  • kescobo (6)
  • M-PERSIC (1)
Pull Request Authors
  • M-PERSIC (9)
  • asinghvi17 (8)
  • kescobo (4)
Top Labels
Issue Labels
documentation (1) high priority (1)
Pull Request Labels
enhancement (1) documentation (1)

Dependencies

.github/workflows/DocCleanup.yml actions
  • actions/checkout v2 composite
.github/workflows/documentation.yml actions
  • actions/checkout v2 composite
  • julia-actions/setup-julia v1 composite
.github/workflows/pr_comment.yml actions
  • thollander/actions-comment-pull-request 71efef56b184328c7ef1f213577c3a90edaa4aff composite
docs/package.json npm
  • @nolebase/vitepress-plugin-enhanced-readabilities ^2.12.1
  • @shikijs/transformers ^2.0.3
  • markdown-it ^14.1.0
  • markdown-it-footnote ^4.0.0
  • markdown-it-mathjax3 ^4.3.2
  • vitepress ^1.6.3
  • vitepress-plugin-tabs ^0.5.0