https://github.com/biojulia/popgencore.jl - v0.7.2

PopGenCore v0.7.2

Diff since v0.7.1

Merged pull requests: - Update URLs from biojulia.net to biojulia.dev (#20) (@kescobo) - CompatHelper: bump compat for StatsBase to 0.34, (keep existing compat) (#21) (@github-actions[bot])

- Julia
Published by github-actions[bot] over 1 year ago

https://github.com/biojulia/popgencore.jl - v0.7.1

PopGenCore v0.7.1

• hotfix plink writer Diff since v0.7.0

- Julia
Published by github-actions[bot] about 4 years ago

https://github.com/biojulia/popgencore.jl - v0.7.0

PopGenCore v0.7.0

Breaking changes

• allelematrix => matrix ### Enhancements
• embrace the use of Val() for dispatch rather than if blocks
• Integrated plink (ped) file reading/writing
• write() has optional method omitting filename keyword
• baypass format file writer
• featurematrix added to make ML-compliant onehot encoded matrices

Diff since v0.6.0

- Julia
Published by github-actions[bot] about 4 years ago

https://github.com/biojulia/popgencore.jl - v0.6.0

PopGenCore v0.6.0

Highlights

• A lot of basic code that gets used a lot is optimized and works a lot faster and allocates a lot less
  • examples include: ishom, uniquealleles, countalleles, allelefreq
• allelematrix code was migrated from PopGen.jl to *Core
• added baypass to file IO to write a Baypass input file. Baypass files cannot be read because there is no individual data in the matrix
• isbiallelic now allows monomorphic loci. This was a tough design call, but it made sense that "biallelic" can be interpreted as "at most two alleles"
• BUGFIX: genocount_expected now treats rearranged alleles as the same genotype (e.g. (1,2) == (2,1) and it didn't before)

Diff since v0.5.1

- Julia
Published by github-actions[bot] about 4 years ago

https://github.com/biojulia/popgencore.jl - v0.5.1

PopGenCore v0.5.1

Diff since v0.5.0

- Julia
Published by github-actions[bot] over 4 years ago

https://github.com/biojulia/popgencore.jl - v0.5.0

PopGenCore v0.5.0

Diff since v0.4.0

- Julia
Published by github-actions[bot] over 4 years ago

https://github.com/biojulia/popgencore.jl - v0.4.0

PopGenCore v0.4.0

Diff since v0.3.0

- Julia
Published by github-actions[bot] almost 5 years ago

https://github.com/biojulia/popgencore.jl - v0.3.0

PopGenCore v0.3.0

Diff since v0.2.0

- Julia
Published by github-actions[bot] almost 5 years ago

https://github.com/biojulia/popgencore.jl - v0.2.0

PopGenCore v0.2.0

Diff since v0.1.1

Closed issues: - [feature] overload getindex (#14) - [bug] structure IO extremely slow for larger data (#10) - [bug] write_to for structure format "filename" kwarg error (#11)

Merged pull requests: - CompatHelper: add new compat entry for VariantCallFormat at version 0.5, (keep existing compat) (#12) (@github-actions[bot]) - CompatHelper: add new compat entry for CodecZlib at version 0.7, (keep existing compat) (#13) (@github-actions[bot]) - CompatHelper: bump compat for CSV to 0.9, (keep existing compat) (#15) (@github-actions[bot])

- Julia
Published by github-actions[bot] almost 5 years ago

https://github.com/biojulia/popgencore.jl - v0.1.1

PopGenCore v0.1.1

Diff since v0.1.0

Closed issues: - [feature] meta df columns as direct objects of PooledArrays pools from loci df (#4) (not implemented) - [feature] Rename meta and loci to metadata and genodata (#5) - [feature] update PopData show (#6)

Merged pull requests: - CompatHelper: add new compat entry for "StatsBase" at version "0.33" (#7) (@github-actions[bot]) - CompatHelper: add new compat entry for "StaticArrays" at version "1" (#8) (@github-actions[bot])

- Julia
Published by github-actions[bot] almost 5 years ago

https://github.com/biojulia/popgencore.jl - v0.1.0

PopGenCore v0.1.0

Closed issues: - [bug] VCF header not found (#1)

- Julia
Published by github-actions[bot] almost 5 years ago