https://github.com/biojulia/biotools.jl

DEPRECATED Interfaces to common external biological tools from julia scripts and programs

Science Score: 23.0%

This score indicates how likely this project is to be science-related based on various indicators:

○
CITATION.cff file
✓
codemeta.json file
Found codemeta.json file
○
.zenodo.json file
○
DOI references
○
Academic publication links
✓
Committers with academic emails
1 of 7 committers (14.3%) from academic institutions
○
Institutional organization owner
○
JOSS paper metadata
○
Scientific vocabulary similarity
Low similarity (14.8%) to scientific vocabulary

Keywords from Contributors

biology bioinformatics biojulia biological-sequences smith-waterman-alignment sequence-analysis sequence-alignment sam-files high-throughput-sequencing dna-sequences

Last synced: 11 months ago · JSON representation

Repository

DEPRECATED Interfaces to common external biological tools from julia scripts and programs

Basic Info

Host: GitHub
Owner: BioJulia
License: mit
Language: Julia
Default Branch: master
Homepage: http://biojulia.dev/BioTools.jl/stable/
Size: 274 KB

Statistics

Stars: 14
Watchers: 11
Forks: 7
Open Issues: 0
Releases: 3

Archived

Created over 9 years ago · Last pushed almost 2 years ago

Metadata Files

Readme Changelog License

README.md

[!WARNING]
This package is old and no longer maintained. Use https://github.com/BioJulia/NCBIBlast.jl/ for BLAST functionality instead

BioTools

Description

BioTools provides interfaces to common external biological tools from julia scripts and programs.

Installation

Install BioTools from the Julia REPL:

```julia using Pkg add("BioTools")

Pkg.add("BioTools") for julia v0.6-

```

If you are interested in the cutting edge of the development, please check out the master branch to try new features before release.

Testing

BioTools is tested against Julia 0.7 and current 1.X on Linux, OS X, and Windows.

| PackageEvaluator | Latest Build Status | |:---------------------------------------------------------------:|:------------------------------------------------------------------------------------------------------:| | | |

Contributing

We appreciate contributions from users including reporting bugs, fixing issues, improving performance and adding new features.

Take a look at the CONTRIBUTING file provided with every BioJulia package package for detailed contributor and maintainer guidelines.

Financial contributions

We also welcome financial contributions in full transparency on our open collective. Anyone can file an expense. If the expense makes sense for the development of the community, it will be "merged" in the ledger of our open collective by the core contributors and the person who filed the expense will be reimbursed.

Backers & Sponsors

Thank you to all our backers and sponsors!

Love our work and community? Become a backer.

Does your company use BioJulia? Help keep BioJulia feature rich and healthy by sponsoring the project Your logo will show up here with a link to your website.

Questions?

If you have a question about contributing or using BioJulia software, come on over and chat to us on Discord, or you can try the Bio category of the Julia discourse site.

Owner

Name: BioJulia
Login: BioJulia
Kind: organization

Website: https://biojulia.dev
Repositories: 79
Profile: https://github.com/BioJulia

Bioinformatics and Computational Biology in Julia

GitHub Events

Total

Last Year

Committers

Last synced: about 1 year ago

All Time

Total Commits: 27
Total Committers: 7
Avg Commits per committer: 3.857
Development Distribution Score (DDS): 0.333

Past Year

Commits: 2
Committers: 1
Avg Commits per committer: 2.0
Development Distribution Score (DDS): 0.0

Top Committers

Name	Email	Commits
Ben J. Ward	w**0@g**m	18
Ciarán O’Mara	c**n@o**u	3
Kevin Bonham	k**n@b**h	2
Fernando Gelin	f**n@b**u	1
Páll Haraldsson	P**n@g**m	1
kdyrhage	k**e@g**m	1
femtocleaner[bot]	f****]	1

Committer Domains (Top 20 + Academic)

brown.edu: 1 bonham.ch: 1 omara.id.au: 1

Issues and Pull Requests

Last synced: 11 months ago

All Time

Total issues: 3
Total pull requests: 11
Average time to close issues: 8 days
Average time to close pull requests: 12 days
Total issue authors: 3
Total pull request authors: 7
Average comments per issue: 2.0
Average comments per pull request: 1.45
Merged pull requests: 10
Bot issues: 0
Bot pull requests: 1

Past Year

Issues: 2
Pull requests: 1
Average time to close issues: 12 days
Average time to close pull requests: 3 minutes
Issue authors: 2
Pull request authors: 1
Average comments per issue: 2.5
Average comments per pull request: 0.0
Merged pull requests: 1
Bot issues: 0
Bot pull requests: 0

View more stats

Top Authors

Issue Authors

hodgensc (1)
kescobo (1)
leejm516 (1)

Pull Request Authors

SabrinaJaye (5)
kescobo (1)
femtocleaner[bot] (1)
PallHaraldsson (1)
fernandogelin (1)
kdyrhage (1)
CiaranOMara (1)

Top Labels

Issue Labels

enhancement (1)

Pull Request Labels

Packages

Total packages: 1
Total downloads:
- julia 1 total

Total dependent packages: 2
Total dependent repositories: 9
Total versions: 4

juliahub.com: BioTools

DEPRECATED Interfaces to common external biological tools from julia scripts and programs

Homepage: http://biojulia.dev/BioTools.jl/stable/
Documentation: https://docs.juliahub.com/General/BioTools/stable/
License: MIT
Latest release: 1.2.0
published almost 2 years ago

Versions: 4
Dependent Packages: 2
Dependent Repositories: 9
Downloads: 1 Total

Rankings

Dependent repos count: 3.3%

Average: 16.8%

Forks count: 17.0%

Dependent packages count: 17.3%

Stargazers count: 29.7%

Last synced: 11 months ago

Dependencies

test/REQUIRE julia

BioCore *