https://github.com/biojulia/biocore.jl
Core types and interfaces for BioJulia packages
Science Score: 10.0%
This score indicates how likely this project is to be science-related based on various indicators:
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○CITATION.cff file
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○codemeta.json file
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○.zenodo.json file
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○DOI references
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○Academic publication links
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✓Committers with academic emails
2 of 6 committers (33.3%) from academic institutions -
○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (15.1%) to scientific vocabulary
Keywords
Keywords from Contributors
Repository
Core types and interfaces for BioJulia packages
Basic Info
- Host: GitHub
- Owner: BioJulia
- License: mit
- Language: Julia
- Default Branch: master
- Homepage: https://biojulia.dev/BioCore.jl/stable
- Size: 389 KB
Statistics
- Stars: 31
- Watchers: 16
- Forks: 11
- Open Issues: 3
- Releases: 0
Topics
Metadata Files
README.md
BioCore.jl
Description
BioCore.jl provides core definitions that are common to all or many packages in the BioJulia ecosystem.
It also includes a definition of a common IO interface for IO of Bioinformatics formats in BioJulia packages, and includes some helper functions for generating file parsers from state machine automata with Automa.jl
Installation
BioCore is a dependency for other BioJulia packages, but you can install it yourself with:
```julia using Pkg add("BioCore")
Pkg.add("BioCore") for julia prior to v0.7
```
If you are interested in the cutting edge of the development, please check out the master branch to try new features before release.
Testing
BioCore.jl is tested against Julia 0.7 and 1.0.x on Linux, OS X, and Windows.
| PackageEvaluator | Latest Build Status |
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Contributing
We appreciate contributions from users including reporting bugs, fixing issues, improving performance and adding new features.
Take a look at the CONTRIBUTING file provided with every BioJulia package package for detailed contributor and maintainer guidelines.
Financial contributions
We also welcome financial contributions in full transparency on our open collective. Anyone can file an expense. If the expense makes sense for the development of the community, it will be "merged" in the ledger of our open collective by the core contributors and the person who filed the expense will be reimbursed.
Backers & Sponsors
Thank you to all our backers and sponsors!
Love our work and community? Become a backer.
Does your company use BioJulia? Help keep BioJulia feature rich and healthy by sponsoring the project Your logo will show up here with a link to your website.
Questions?
If you have a question about contributing or using BioJulia software, come on over and chat to us on Discord, or you can try the Bio category of the Julia discourse site.
Owner
- Name: BioJulia
- Login: BioJulia
- Kind: organization
- Website: https://biojulia.dev
- Repositories: 79
- Profile: https://github.com/BioJulia
Bioinformatics and Computational Biology in Julia
GitHub Events
Total
- Watch event: 3
Last Year
- Watch event: 3
Committers
Last synced: 8 months ago
Top Committers
| Name | Commits | |
|---|---|---|
| Ben J. Ward | w****0@g****m | 37 |
| Kenta Sato | b****5@g****m | 4 |
| Ben J. Ward | b****d@e****k | 1 |
| Daniel C. Jones | d****s@c****u | 1 |
| Kevin Bonham | k****m@g****m | 1 |
| Morten Piibeleht | m****t@g****m | 1 |
Committer Domains (Top 20 + Academic)
Issues and Pull Requests
Last synced: 6 months ago
All Time
- Total issues: 3
- Total pull requests: 17
- Average time to close issues: 1 day
- Average time to close pull requests: 27 days
- Total issue authors: 2
- Total pull request authors: 5
- Average comments per issue: 1.33
- Average comments per pull request: 1.71
- Merged pull requests: 13
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 0
- Pull requests: 0
- Average time to close issues: N/A
- Average time to close pull requests: N/A
- Issue authors: 0
- Pull request authors: 0
- Average comments per issue: 0
- Average comments per pull request: 0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
- SabrinaJaye (2)
- ivirshup (1)
- mashu (1)
Pull Request Authors
- SabrinaJaye (12)
- bicycle1885 (2)
- kescobo (1)
- mortenpi (1)
- dcjones (1)
Top Labels
Issue Labels
Pull Request Labels
Packages
- Total packages: 1
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Total downloads:
- julia 10 total
- Total dependent packages: 14
- Total dependent repositories: 26
- Total versions: 6
juliahub.com: BioCore
Core types and interfaces for BioJulia packages
- Homepage: https://biojulia.dev/BioCore.jl/stable
- Documentation: https://docs.juliahub.com/General/BioCore/stable/
- License: MIT
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Latest release: 2.0.5
published over 7 years ago
Rankings
Dependencies
- Automa 0.7
- BufferedStreams 1.0.0
- YAML *
- julia 0.7