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Recent Releases of https://github.com/biolink/ontobio

https://github.com/biolink/ontobio - v2.9.11

What's Changed

  • update relation map in relations.py to match expectations by @sierra-moxon in https://github.com/biolink/ontobio/pull/696
  • refactor method to use .get() and check for property availablity befo… by @sierra-moxon in https://github.com/biolink/ontobio/pull/699
  • Issue pipeline 387 - add GAF header information to aggregated GPAD produced by megamake step (aka. ontobio/bin/validate.py) by @sierra-moxon in https://github.com/biolink/ontobio/pull/698

Full Changelog: https://github.com/biolink/ontobio/compare/v2.9.10...v2.9.11

- Python
Published by sierra-moxon over 1 year ago

https://github.com/biolink/ontobio - v2.9.8

What's Changed

  • Bump cryptography from 43.0.0 to 43.0.1 by @dependabot in https://github.com/biolink/ontobio/pull/690
  • add an optional test to make sure full validate produce is run when l… by @sierra-moxon in https://github.com/biolink/ontobio/pull/685

New Contributors

  • @dependabot made their first contribution in https://github.com/biolink/ontobio/pull/690

Full Changelog: https://github.com/biolink/ontobio/compare/v2.9.7...v2.9.8

- Python
Published by sierra-moxon over 1 year ago

https://github.com/biolink/ontobio - v2.9.6

What's Changed

  • Pypi publish by @sierra-moxon in https://github.com/biolink/ontobio/pull/686

Full Changelog: https://github.com/biolink/ontobio/compare/v2.9.5...v2.9.6

- Python
Published by sierra-moxon almost 2 years ago

https://github.com/biolink/ontobio - v2.9.5

What's Changed

  • fixes pipeline issue 383 - gpad 1.2 should have !gpa-version in the header, not !gpad-version in the header by @sierra-moxon in https://github.com/biolink/ontobio/pull/684
  • force GAF 2.2 output, instead of taking version from input GAFs - fixing the chickens by @sierra-moxon in https://github.com/biolink/ontobio/pull/683

Full Changelog: https://github.com/biolink/ontobio/compare/v2.9.4...v2.9.5

- Python
Published by sierra-moxon almost 2 years ago

https://github.com/biolink/ontobio - v2.9.4

What's Changed

  • For #2210 by @mugitty in https://github.com/biolink/ontobio/pull/679
  • fixes pipeline issue 380 by editing the header, taxon, type of the GP… by @sierra-moxon in https://github.com/biolink/ontobio/pull/682
  • swaps subject with gene when subject is PR isoform by @sierra-moxon in https://github.com/biolink/ontobio/pull/681

Full Changelog: https://github.com/biolink/ontobio/compare/v2.9.3...v2.9.4

- Python
Published by sierra-moxon almost 2 years ago