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Open Source Science

https://github.com/biolink/ingest-metadata

https://github.com/biolink/ingest-metadata

Science Score: 26.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ○
    DOI references
  • ○
    Academic publication links
  • ○
    Committers with academic emails
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (9.4%) to scientific vocabulary

Keywords from Contributors

knowledge-graphs
Last synced: 9 months ago · JSON representation

Repository

Basic Info
Statistics
  • Stars: 0
  • Watchers: 0
  • Forks: 0
  • Open Issues: 0
  • Releases: 0
Created 12 months ago · Last pushed 9 months ago
Metadata Files
Readme Contributing License Code of conduct

README.md

ingest-metadata

Schema hosting relevant metadata for a data transformation conformant to the Biolink Model

Website

https://biolink.github.io/ingest-metadata

Repository Structure

Developer Documentation

Prerequisites

This project uses uv for dependency management. Install uv first:

```bash

On macOS and Linux

curl -LsSf https://astral.sh/uv/install.sh | sh

On Windows

powershell -ExecutionPolicy ByPass -c "irm https://astral.sh/uv/install.ps1 | iex"

Alternative: using pip

pip install uv ```

Getting Started

  1. Clone the repository: bash git clone https://github.com/biolink/ingest-metadata.git cd ingest-metadata

  2. Install dependencies: bash uv sync

  3. Run tests: bash make test

Development Commands

To run commands you may use good old make or the command runner just which is a better choice on Windows. Use the make command or duty commands to generate project artefacts: * make help or just --list: list all pre-defined tasks * make all or just all: make everything * make deploy or just deploy: deploys site * make install: install dependencies with uv * uv sync: install dependencies directly with uv * make test: run tests

Credits

This project was made with linkml-project-cookiecutter.

Owner

  • Name: biolink
  • Login: biolink
  • Kind: organization

GitHub Events

Total
  • Push event: 12
  • Pull request review event: 1
  • Pull request event: 1
  • Create event: 1
Last Year
  • Push event: 12
  • Pull request review event: 1
  • Pull request event: 1
  • Create event: 1

Committers

Last synced: 11 months ago

All Time
  • Total Commits: 11
  • Total Committers: 2
  • Avg Commits per committer: 5.5
  • Development Distribution Score (DDS): 0.182
Past Year
  • Commits: 11
  • Committers: 2
  • Avg Commits per committer: 5.5
  • Development Distribution Score (DDS): 0.182
Top Committers
Name Email Commits
Sierra Taylor Moxon s****r@g****m 9
GitHub Action a****n@g****m 2
Committer Domains (Top 20 + Academic)
github.com: 1

Issues and Pull Requests

Last synced: 9 months ago

All Time
  • Total issues: 0
  • Total pull requests: 1
  • Average time to close issues: N/A
  • Average time to close pull requests: N/A
  • Total issue authors: 0
  • Total pull request authors: 1
  • Average comments per issue: 0
  • Average comments per pull request: 0.0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 0
  • Pull requests: 1
  • Average time to close issues: N/A
  • Average time to close pull requests: N/A
  • Issue authors: 0
  • Pull request authors: 1
  • Average comments per issue: 0
  • Average comments per pull request: 0.0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
Pull Request Authors
  • RichardBruskiewich (1)
Top Labels
Issue Labels
Pull Request Labels

Dependencies

.github/workflows/codespell.yaml actions
  • actions/checkout v3 composite
  • codespell-project/actions-codespell v1 composite
.github/workflows/deploy-docs.yaml actions
  • actions/checkout v4 composite
  • actions/setup-python v5 composite
  • astral-sh/setup-uv v5 composite
.github/workflows/main.yaml actions
  • actions/checkout v4 composite
  • actions/setup-python v5 composite
  • astral-sh/setup-uv v5 composite
.github/workflows/pypi-publish.yaml actions
  • actions/checkout v4 composite
  • actions/setup-python v5 composite
  • astral-sh/setup-uv v5 composite
  • pypa/gh-action-pypi-publish release/v1 composite
.github/workflows/regenerate-artifacts.yaml actions
  • actions/checkout v4 composite
  • actions/setup-python v5 composite
  • astral-sh/setup-uv v5 composite
.github/workflows/validate-ingest-metadata-schema.yaml actions
  • actions/checkout v4 composite
  • astral-sh/setup-uv v5 composite
pyproject.toml pypi
  • linkml-runtime >=1.1.24
  • yamllint >=1.37.1,<2.0.0
uv.lock pypi
  • 221 dependencies