Data

Tools

Indexes

Applications

Experiments

Open Source Science

https://github.com/biolink/biolinkml

DEPRECATED: replaced by linkml

https://github.com/biolink/biolinkml

Science Score: 10.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ○
    codemeta.json file
  • ○
    .zenodo.json file
  • ○
    DOI references
  • ○
    Academic publication links
  • ✓
    Committers with academic emails
    2 of 10 committers (20.0%) from academic institutions
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (3.3%) to scientific vocabulary

Keywords

biolink deprecated-repo json-ld json-schema owl semantic-web shex uml

Keywords from Contributors

knowledge-graph ncats-translator linked-data rdf biolink-model neo4j ncats json-api gene-ontology datamodel
Last synced: 6 months ago · JSON representation

Repository

DEPRECATED: replaced by linkml

Basic Info
Statistics
  • Stars: 23
  • Watchers: 13
  • Forks: 12
  • Open Issues: 1
  • Releases: 0
Archived
Topics
biolink deprecated-repo json-ld json-schema owl semantic-web shex uml
Created about 7 years ago · Last pushed almost 5 years ago
Metadata Files
Readme Changelog License

README.md

Pyversions PyPi

DEPRECATED

BiolinkML has been replaced by LinkML

  • https://github.com/linkml/linkml
  • https://linkml.github.io

The existing biolinkml PyPI and github repo and w3id will continue to be supported but we recommend everyone switch to LinkML

See the migration guide

Owner

  • Name: biolink
  • Login: biolink
  • Kind: organization

GitHub Events

Total
Last Year

Committers

Last synced: 6 months ago

All Time
  • Total Commits: 627
  • Total Committers: 10
  • Avg Commits per committer: 62.7
  • Development Distribution Score (DDS): 0.431
Past Year
  • Commits: 0
  • Committers: 0
  • Avg Commits per committer: 0.0
  • Development Distribution Score (DDS): 0.0
Top Committers
Name Email Commits
hsolbrig s****g@j****u 357
GitHub Action a****n@g****m 98
cmungall c****m@b****g 95
jiaola d****o@j****u 43
Richard Bruskiewich r****h@d****m 11
rajshruti s****u@g****m 6
Deepak Unni d****3@g****m 5
Richard Bruskiewich r****d@s****m 5
hsolbrig s****g@e****t 5
rajshruti18 s****j@r****g 2
Committer Domains (Top 20 + Academic)
jhu.edu: 2 renci.org: 1 earthlink.net: 1 starinformatics.com: 1 delphinai.com: 1 berkeleybop.org: 1 github.com: 1

Issues and Pull Requests

Last synced: 6 months ago

All Time
  • Total issues: 56
  • Total pull requests: 44
  • Average time to close issues: 7 months
  • Average time to close pull requests: 29 days
  • Total issue authors: 9
  • Total pull request authors: 6
  • Average comments per issue: 1.63
  • Average comments per pull request: 0.89
  • Merged pull requests: 34
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 0
  • Pull requests: 0
  • Average time to close issues: N/A
  • Average time to close pull requests: N/A
  • Issue authors: 0
  • Pull request authors: 0
  • Average comments per issue: 0
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
  • hsolbrig (21)
  • cmungall (20)
  • wdduncan (5)
  • RichardBruskiewich (3)
  • dwinston (2)
  • jiaola (2)
  • PhillipsOwen (1)
  • matentzn (1)
  • balhoff (1)
Pull Request Authors
  • cmungall (21)
  • hsolbrig (15)
  • RichardBruskiewich (4)
  • deepakunni3 (2)
  • rajshruti18 (1)
  • sierra-moxon (1)
Top Labels
Issue Labels
Underway (4) question (3) Low Priority (2) Documentation Needed (1) Defer (1) Close Pending (1) metamodel extension (1)
Pull Request Labels

Packages

  • Total packages: 1
  • Total downloads:
    • pypi 1,442 last-month
  • Total dependent packages: 4
  • Total dependent repositories: 9
  • Total versions: 40
  • Total maintainers: 3
pypi.org: biolinkml

Biolink Modeling Language

  • Versions: 40
  • Dependent Packages: 4
  • Dependent Repositories: 9
  • Downloads: 1,442 Last month
Rankings
Dependent packages count: 1.9%
Dependent repos count: 4.8%
Average: 8.0%
Downloads: 10.0%
Forks count: 10.5%
Stargazers count: 12.7%
Maintainers (3)
cmungall hsolbrig djiao
Last synced: 6 months ago

Dependencies

requirements-dev.txt pypi
  • ipykernel * development
  • nbconvert * development
  • nbformat * development
  • pipenv-to-requirements * development
  • tox * development
  • tox-pipenv * development
  • unittest2 * development
requirements.txt pypi
  • argparse >=1.4.0
  • click *
  • graphviz >=0.10.1
  • hbreader *
  • isodate >=0.6.0
  • jsonasobj >=1.2.1
  • jsonschema >=3.0.1
  • parse *
  • prefixcommons >=0.1.7
  • prologterms >=0.0.6
  • pyjsg >=0.11.6
  • pyld *
  • pyshex >=0.7.20
  • pyshexc >=0.8.3
  • pyyaml *
  • rdflib >=5.0.0
  • rdflib-jsonld >=0.5.0
  • rdflib-pyld-compat *
  • requests >=2.22
  • watchdog >=0.9.0
jekyll-theme-dinky.gemspec rubygems
  • jekyll ~> 3.5
  • jekyll-seo-tag ~> 2.0