https://github.com/biop/argolight_analysis_tool - v1.1.0

New features

• Microscopes list is generated automatically by looking at the available datasets / folders (fixes #2)
• Heat maps are scaled in to FoV of the imaged pattern (fixes #3)
• Handle microsopes at project level on OMERO (fixes #4)

Improvements

• add a namespace to files and key-values
• add a disconnection button to be able to login again on OMERO with another account
• Reset the password when logged-in
• Update to simple-omero-client 5.19.0

- Java
Published by Rdornier over 1 year ago

https://github.com/biop/argolight_analysis_tool - v1.0.0

New Features

• Support widefield microscopes, with fixed FoV like CCD cameras. To activate this functionnality, the token "FoV" should be "fixedFov".
• ArgoSlide selection in the GUI. Add specs of the slides and select a default one.
• Add ArgoSlide specifications as KVP on OMERO.
• Add the option to use processing settings only once, for the current analysis only.
• New way to compute the rotation angle in order to fix numerous bugs (bad detection in the corners, target translated...) => previous analysis may not be compatible with new ones.
• Add new tags to OMERO : include the analyzed metrics.

Bug fix

• Include nd2 files.
• Unlink tags when cleaning previous runs.
• Fix crash during cleaning when there is no tables / no ROIs on OMERO.
• Correct extraction of the tokens from the image name (regex update).
• Fix crash with ROI Manager when an error occur during the analysis.
• Correctly set the processing parameters if they are set from the live preview window.
• Write NaN for the rotation angle in the live preview window if the angle cannot be computed.
• Take into account the user input from the GUI to get the OMERO project ID (not only take into account the default ID in the settings).
• Fix rotation issue => new way of computation.
• Handle exception if the central cross is not detected.
• Process all images and remove previous runs for local images ==> take into account the user input, which wasn't the case before.

Updates

• Move to simple omero client 5.15.0.
• Move to omero-gateway 5.8.1 (to fix bug on omero.tables).
• Clean dependencies.
• Update parent pom to 36.0.0.

- Java
Published by Rdornier over 2 years ago

https://github.com/biop/argolight_analysis_tool - Move to simple-omero-client 5.14.0 and fix bugs

The 5.14.0 version of simple-omero-client is now integrated to the plugin. It allows to delete all the OMERO tables attached to one image/dataset with only one API call.

Bug fix - Previous runs are deleted when asking for cleaning (for local sending) - Clearly separate the two csv tables (for local sending) in the code and read/write the correct one. - "processed_images" file includes the date in its name - small refactoring of internal variables

- Java
Published by Rdornier almost 3 years ago

https://github.com/biop/argolight_analysis_tool - Add local images retriever

The plugin now includes the possibility to have images on a local computer, not only on OMERO. The processing preview also works with local images.

- Java
Published by Rdornier almost 3 years ago

https://github.com/biop/argolight_analysis_tool - First release

This tool has been made to assess the quality of objectives. Please look at the readme for more details.

In the current version, images have to be stored on an OMERO server (there is no possibiliy to have them locally). However, you have the possibility to save results either on OMERO or locally.

- Java
Published by Rdornier about 3 years ago