https://github.com/biopython/biopython.github.io

Source of biopython.org website, migrated from MediaWiki

https://github.com/biopython/biopython.github.io

Science Score: 36.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • CITATION.cff file
  • codemeta.json file
    Found codemeta.json file
  • .zenodo.json file
    Found .zenodo.json file
  • DOI references
  • Academic publication links
  • Committers with academic emails
    10 of 100 committers (10.0%) from academic institutions
  • Institutional organization owner
  • JOSS paper metadata
  • Scientific vocabulary similarity
    Low similarity (5.5%) to scientific vocabulary

Keywords from Contributors

bioinformatics genomics phylogenetics protein-structure protein sequence-alignment biopython dna pdb structural-bioinformatics
Last synced: 10 months ago · JSON representation

Repository

Source of biopython.org website, migrated from MediaWiki

Basic Info
  • Host: GitHub
  • Owner: biopython
  • Language: CSS
  • Default Branch: master
  • Homepage: biopython.org
  • Size: 7.28 MB
Statistics
  • Stars: 159
  • Watchers: 25
  • Forks: 317
  • Open Issues: 24
  • Releases: 0
Created over 10 years ago · Last pushed about 1 year ago
Metadata Files
Readme

README.md


title: Biopython.org website README

layout: default

The git repository at https://github.com/biopython/biopython.github.io/ produces the Biopython website at https://biopython.org using GitHub Pages (rendered using Jekyll, see https://help.github.com/articles/using-jekyll-with-pages/ for details).

Almost all of the content is under the URL prefix /wiki/ because this was based on an automated conversion of the old MediaWiki website, using https://github.com/peterjc/mediawiki_to_git_md to turn all the changes in the MediaWiki XML export file into into markdown (using pandoc) as a git repository.

The old MediaWiki usernames were manually mapped to GitHub accounts. About 20 accounts on the wiki (mostly single contributions) could not be identified, but the old username is still logged in the git commits.

Note the website content under /DIST/ is hosted in a separate GitHub Pages project repository https://github.com/biopython/DIST covering the Biopython releases and assorted documentation files.

Owner

  • Name: Biopython Project
  • Login: biopython
  • Kind: organization

GitHub Events

Total
  • Watch event: 8
  • Issue comment event: 6
  • Push event: 11
  • Pull request event: 10
  • Fork event: 44
Last Year
  • Watch event: 8
  • Issue comment event: 6
  • Push event: 11
  • Pull request event: 10
  • Fork event: 44

Committers

Last synced: about 1 year ago

All Time
  • Total Commits: 2,760
  • Total Committers: 100
  • Avg Commits per committer: 27.6
  • Development Distribution Score (DDS): 0.51
Past Year
  • Commits: 32
  • Committers: 8
  • Avg Commits per committer: 4.0
  • Development Distribution Score (DDS): 0.469
Top Committers
Name Email Commits
Peter Cock p****k@g****m 1,352
Michiel de Hoon m****n@y****m 248
Eric Talevich e****h@g****m 156
Tiago Antao t****o@g****m 118
Justinas Daugmaudis v****d@g****m 110
Brad Chapman c****b@f****m 78
David Winter d****r@g****m 70
Michele Silva m****a@g****m 52
João Rodrigues a****n@g****m 44
Nick Matzke m****e@b****u 38
Genivaldo Gueiros g****s@g****m 37
Einar a****r@e****g 36
Markus Piotrowski M****i@r****e 31
Mikael Trellet m****t@g****m 28
Vincent Davis v****t@h****m 25
Chris Lasher c****r@g****m 22
Iddo Friedberg i****g@g****m 22
Andrew Sczesnak a****z@g****m 21
Bartek Wilczynski b****l@g****m 21
Jason Stajich j****n@b****g 17
Thomas Hamelryck t****k@g****m 14
Ramon Crehuet r****t@g****m 12
Sebastian Bassi s****i@g****m 12
Leighton Pritchard l****d@m****m 11
Chris Daley c****o@g****m 11
Giovanni Dall'Olio g****o@u****u 11
Julius Lucks j****s@g****m 10
Mauricio Herrera Cuadra m****o@a****t 10
Lenna Peterson a****a@g****m 8
Alex Lancaster a****l@u****t 8
and 70 more...

Issues and Pull Requests

Last synced: 10 months ago

All Time
  • Total issues: 83
  • Total pull requests: 123
  • Average time to close issues: about 1 month
  • Average time to close pull requests: 4 months
  • Total issue authors: 27
  • Total pull request authors: 57
  • Average comments per issue: 4.53
  • Average comments per pull request: 2.31
  • Merged pull requests: 101
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 0
  • Pull requests: 6
  • Average time to close issues: N/A
  • Average time to close pull requests: about 14 hours
  • Issue authors: 0
  • Pull request authors: 4
  • Average comments per issue: 0
  • Average comments per pull request: 0.0
  • Merged pull requests: 3
  • Bot issues: 0
  • Bot pull requests: 0
Top Authors
Issue Authors
  • peterjc (35)
  • MarkusPiotrowski (12)
  • vincentdavis (10)
  • mgudapak (2)
  • tiagoantao (2)
  • hlapp (1)
  • azdaly (1)
  • Logan1x (1)
  • bganglia (1)
  • lennax (1)
  • neelam19051 (1)
  • bhavaygg (1)
  • wangxj524 (1)
  • maryame (1)
  • souvikde99 (1)
Pull Request Authors
  • MarkusPiotrowski (31)
  • vincentdavis (8)
  • chebizarro (4)
  • peterjc (4)
  • sars1492 (4)
  • mdehoon (4)
  • lennax (3)
  • LalitNM (3)
  • erik-whiting (2)
  • szabgab (2)
  • brandoninvergo (2)
  • jgreener64 (2)
  • Gasta88 (2)
  • fabianegli (2)
  • ghost (2)
Top Labels
Issue Labels
help wanted (18)
Pull Request Labels

Dependencies

Gemfile rubygems
  • github-pages >= 0