https://github.com/biosimulations/biosimulations-bigg
Command-line program and scheduled GitHub action for publishing the BiGG model repository to BioSimulations
Science Score: 13.0%
This score indicates how likely this project is to be science-related based on various indicators:
-
○CITATION.cff file
-
✓codemeta.json file
Found codemeta.json file -
○.zenodo.json file
-
○DOI references
-
○Academic publication links
-
○Committers with academic emails
-
○Institutional organization owner
-
○JOSS paper metadata
-
○Scientific vocabulary similarity
Low similarity (12.0%) to scientific vocabulary
Keywords
Keywords from Contributors
Repository
Command-line program and scheduled GitHub action for publishing the BiGG model repository to BioSimulations
Basic Info
- Host: GitHub
- Owner: biosimulations
- License: mit
- Language: Python
- Default Branch: dev
- Homepage: https://docs.biosimulations.org/repositories/bigg
- Size: 259 MB
Statistics
- Stars: 1
- Watchers: 0
- Forks: 0
- Open Issues: 8
- Releases: 5
Topics
Metadata Files
README.md
BioSimulations-BiGG
BioSimulations-BiGG provides a command-line application for publishing the BiGG model repository of flux balance models to the BioSimulations repository for simulation projects.
This command-line program is run weekly by the GitHub action in this repository.
Installation
Requirements
- Python >= 3.7
- pip
Install latest revision from GitHub
pip install git+https://github.com/biosimulations/biosimulations-bigg.git#biosimulations-bigg
API documentation
API documentation is available here.
License
This package is released under the MIT license. BiGG is licensed under the BiGG License.
Development team
This package was developed by the Karr Lab at the Icahn School of Medicine at Mount Sinai in New York and the Center for Reproducible Biomedical Modeling. BiGG was developed by the Systems Biology Research Group at the University of California, San Diego with assistance from the contributors listed here.
Contributing to BioSimulations-BiGG
We enthusiastically welcome contributions to BioSimulations-BiGG! Please see the guide to contributing and the developer's code of conduct.
Acknowledgements
This work was supported by National Institutes of Health award P41EB023912.
Questions and comments
Please contact the BioSimulations Team with any questions or comments about this package. Please contact the BiGG Team with any questions or comments about BiGG.
Owner
- Name: BioSimulations
- Login: biosimulations
- Kind: organization
- Email: info@biosimulations.org
- Location: United States of America
- Website: https://biosimulations.org
- Twitter: Bio_Sims
- Repositories: 11
- Profile: https://github.com/biosimulations
Enabling more comprehensive and more predictive biological models through enhanced reproducibility and reusability
GitHub Events
Total
- Delete event: 2
- Pull request event: 5
- Create event: 2
Last Year
- Delete event: 2
- Pull request event: 5
- Create event: 2
Committers
Last synced: almost 3 years ago
All Time
- Total Commits: 104
- Total Committers: 4
- Avg Commits per committer: 26.0
- Development Distribution Score (DDS): 0.385
Top Committers
| Name | Commits | |
|---|---|---|
| Jonathan Karr | j****r@g****m | 64 |
| biosimulationsdaemon | b****n@g****m | 37 |
| Bilal Shaikh | b****2@g****m | 2 |
| Renovate Bot | b****t@r****m | 1 |
Committer Domains (Top 20 + Academic)
Issues and Pull Requests
Last synced: 7 months ago
All Time
- Total issues: 10
- Total pull requests: 16
- Average time to close issues: 23 days
- Average time to close pull requests: 7 months
- Total issue authors: 3
- Total pull request authors: 1
- Average comments per issue: 0.9
- Average comments per pull request: 0.69
- Merged pull requests: 1
- Bot issues: 1
- Bot pull requests: 16
Past Year
- Issues: 0
- Pull requests: 2
- Average time to close issues: N/A
- Average time to close pull requests: N/A
- Issue authors: 0
- Pull request authors: 1
- Average comments per issue: 0
- Average comments per pull request: 0.0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 2
Top Authors
Issue Authors
- jonrkarr (8)
- bilalshaikh42 (1)
- renovate[bot] (1)
Pull Request Authors
- renovate[bot] (23)
Top Labels
Issue Labels
Pull Request Labels
Packages
- Total packages: 1
-
Total downloads:
- pypi 36 last-month
- Total dependent packages: 0
- Total dependent repositories: 1
- Total versions: 5
- Total maintainers: 4
pypi.org: biosimulations-bigg
Command-line program for publishing the BiGG model repository to BioSimulations.
- Homepage: https://github.com/biosimulations/biosimulations-bigg
- Documentation: https://biosimulations-bigg.readthedocs.io/
- License: MIT
-
Latest release: 0.0.5
published almost 4 years ago
Rankings
Maintainers (4)
Dependencies
- actions/cache v2 composite
- actions/checkout v2 composite
- actions/create-release v1 composite
- actions/setup-python v2 composite
- ad-m/github-push-action master composite
- codecov/codecov-action v2 composite
- actions/cache v2 composite
- actions/checkout v2 composite
- actions/setup-python v2 composite
- actions/cache v2 composite
- actions/checkout v2 composite
- actions/setup-python v2 composite
- ad-m/github-push-action master composite
- actions/cache v2 composite
- actions/checkout v2 composite
- actions/setup-python v2 composite