Science Score: 77.0%
This score indicates how likely this project is to be science-related based on various indicators:
-
✓CITATION.cff file
Found CITATION.cff file -
✓codemeta.json file
Found codemeta.json file -
✓.zenodo.json file
Found .zenodo.json file -
✓DOI references
Found 3 DOI reference(s) in README -
✓Academic publication links
Links to: zenodo.org -
✓Committers with academic emails
5 of 18 committers (27.8%) from academic institutions -
○Institutional organization owner
-
○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (17.0%) to scientific vocabulary
Keywords
Keywords from Contributors
Repository
Track XNAT projects with DataLad
Basic Info
Statistics
- Stars: 4
- Watchers: 9
- Forks: 9
- Open Issues: 13
- Releases: 4
Topics
Metadata Files
README.md
DataLad extension tracking data in an XNAT server
<!-- ALL-CONTRIBUTORS-BADGE:END -->
This software is a DataLad extension that equips DataLad with a set of commands to track XNAT projects.
XNAT is an open source imaging informatics platform developed by the Neuroinformatics Research Group at Washington University. It facilitates common management, productivity, and quality assurance tasks for imaging and associated data. XNAT can be used to support a wide range of neuro/medical imaging-based projects.
Command(s) provided by this extension
xnat-init-- Initialize an existing dataset to track an XNAT projectxnat-update-- Update an existing dataset of an XNAT project; retrieve data from the tracked projectxnat-query-files-- Query available files on an XNAT instance or project
Installation
Before you install this package, please make sure that you install a recent
version of git-annex. Afterwards,
install the latest version of datalad-xnat from
PyPi. It is recommended to use
a dedicated virtualenv:
# create and enter a new virtual environment (optional)
virtualenv --system-site-packages --python=python3 ~/env/datalad
. ~/env/datalad/bin/activate
# install from PyPi
pip install datalad_xnat
Support
For general information on how to use or contribute to DataLad (and this extension), please see the DataLad website or the main GitHub project page.
All bugs, concerns and enhancement requests for this software can be submitted here: https://github.com/datalad/datalad-xnat/issues
If you have a problem or would like to ask a question about how to use DataLad,
please submit a question to
NeuroStars.org with a datalad tag.
NeuroStars.org is a platform similar to StackOverflow but dedicated to
neuroinformatics.
All previous DataLad questions are available here: http://neurostars.org/tags/datalad/
Acknowledgements
This development was supported by European Union’s Horizon 2020 research and innovation programme under grant agreement VirtualBrainCloud (H2020-EU.3.1.5.3, grant no. 826421).
Contributors ✨
Thanks goes to these wonderful people (emoji key):
This project follows the all-contributors specification. Contributions of any kind welcome!
Owner
- Name: DataLad
- Login: datalad
- Kind: organization
- Email: team@datalad.org
- Location: USA&Germany
- Website: http://datalad.org
- Repositories: 97
- Profile: https://github.com/datalad
Data distribution and management platform
Citation (CITATION.cff)
cff-version: 1.2.0
message: Please cite the following works when using this software.
authors:
- family-names: "Halchenko"
given-names: "Yaroslav"
orcid: "https://orcid.org/0000-0003-3456-2493"
- family-names: "Poldrack"
given-names: "Benjamin"
orcid: "https://orcid.org/0000-0001-7628-0801"
- family-names: "Wagner"
given-names: "Adina"
orcid: "https://orcid.org/0000-0003-2917-3450"
- family-names: "Waite"
given-names: "Laura"
orcid: "https://orcid.org/0000-0003-2213-7465"
- family-names: "Hanke"
given-names: "Michael"
orcid: "https://orcid.org/0000-0001-6398-6370"
- family-names: "Wodder"
given-names: "John T."
- family-names: "Raina"
given-names: "Janvi"
- family-names: "Heunis"
given-names: "Stephan"
- family-names: "Tsankeu"
given-names: "Odelfa"
- family-names: "Szczepanik"
given-names: "Michał"
orcid: https://orcid.org/0000-0002-4028-2087
- family-names: "Waite"
given-names: "Alex"
orcid: "https://orcid.org/0000-0002-8402-6173"
- family-names: "Portoles"
given-names: "Oscar"
orcid: "https://orcid.org/0000-0001-8308-3873"
doi:
identifiers:
- type: doi
value:
keywords:
- Computational reproducibility
- reproducibility
- Python
- data management
- workflow
title: >-
DataLad XNAT extension
version: 0.2
date-released: 2021-09-30
url: "https://github.com/datalad/datalad-xnat"
GitHub Events
Total
Last Year
Committers
Last synced: about 2 years ago
Top Committers
| Name | Commits | |
|---|---|---|
| Michael Hanke | m****e@g****m | 122 |
| allcontributors[bot] | 4****] | 34 |
| Adina Wagner | a****r@t****e | 29 |
| Laura Waite | l****a@w****u | 25 |
| John T. Wodder II | g****t@v****g | 17 |
| Benjamin Poldrack | b****k@g****m | 13 |
| Michał Szczepanik | m****k@f****e | 11 |
| Yaroslav Halchenko | d****n@o****m | 11 |
| Tsankeu Odelfa | o****g@t****e | 5 |
| Stephan Heunis | s****s@f****e | 4 |
| Alex Waite | a****x@w****u | 1 |
| Matthias Riße | m****e@f****e | 1 |
| JanviRaina | j****a@g****m | 1 |
| DataLad Bot | b****t@d****g | 1 |
| Chris Markiewicz | e****s@g****m | 1 |
| oportoles | o****s@f****e | 1 |
| dependabot[bot] | 4****] | 1 |
| Michał Szczepanik | m****2@g****m | 1 |
Committer Domains (Top 20 + Academic)
Issues and Pull Requests
Last synced: 6 months ago
All Time
- Total issues: 49
- Total pull requests: 57
- Average time to close issues: about 2 months
- Average time to close pull requests: about 5 hours
- Total issue authors: 10
- Total pull request authors: 11
- Average comments per issue: 1.61
- Average comments per pull request: 1.32
- Merged pull requests: 54
- Bot issues: 0
- Bot pull requests: 14
Past Year
- Issues: 0
- Pull requests: 0
- Average time to close issues: N/A
- Average time to close pull requests: N/A
- Issue authors: 0
- Pull request authors: 0
- Average comments per issue: 0
- Average comments per pull request: 0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
- mih (19)
- adswa (17)
- bpoldrack (3)
- loj (3)
- jsheunis (2)
- jwodder (1)
- yarikoptic (1)
- aqw (1)
- mslw (1)
- oportoles (1)
Pull Request Authors
- adswa (14)
- allcontributors[bot] (13)
- mih (10)
- bpoldrack (8)
- mslw (3)
- tsankeuodelfa (3)
- loj (2)
- jwodder (1)
- dependabot[bot] (1)
- oportoles (1)
- aqw (1)
Top Labels
Issue Labels
Pull Request Labels
Packages
- Total packages: 1
-
Total downloads:
- pypi 326 last-month
- Total dependent packages: 0
- Total dependent repositories: 1
- Total versions: 3
- Total maintainers: 2
pypi.org: datalad-xnat
DataLad support for XNAT server access
- Homepage: https://github.com/datalad/datalad-xnat
- Documentation: https://datalad-xnat.readthedocs.io/
- License: MIT
-
Latest release: 0.2.1
published over 2 years ago
Rankings
Maintainers (2)
Dependencies
- coverage * development
- nose * development
- sphinx * development
- sphinx_rtd_theme * development