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regtricks

Tools for manipulating, combining and applying image registrations.

https://github.com/tomfrankkirk/regtricks

Science Score: 54.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ✓
    CITATION.cff file
    Found CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ○
    DOI references
  • ○
    Academic publication links
  • ✓
    Committers with academic emails
    1 of 4 committers (25.0%) from academic institutions
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (2.9%) to scientific vocabulary
Last synced: 7 months ago · JSON representation ·

Repository

Tools for manipulating, combining and applying image registrations.

Basic Info
  • Host: GitHub
  • Owner: tomfrankkirk
  • License: bsd-3-clause
  • Language: Python
  • Default Branch: master
  • Homepage:
  • Size: 1.25 MB
Statistics
  • Stars: 3
  • Watchers: 1
  • Forks: 1
  • Open Issues: 0
  • Releases: 1
Created about 6 years ago · Last pushed about 2 years ago
Metadata Files
Readme Contributing License Citation

README.md

Regtricks

Tools for manipulating, combining and applying image transformations.

Install via pip: pip install regtricks

Documentation: https://regtricks.readthedocs.io/en/latest/

Further reading

An explanation of the FSL coordinate system: https://fsl.fmrib.ox.ac.uk/fsl/fslwiki/FLIRT/FAQ

Acknowledgements

The FLIRT matrix adjustment code was supplied by Tim Coalson and Martin Craig, adapted from (https://github.com/Washington-University/workbench/blob/9c34187281066519e78841e29dc14bef504776df/src/Nifti/NiftiHeader.cxx#L168) and (https://github.com/Washington-University/workbench/blob/335ad0c910ca9812907ea92ba0e5563225eee1e6/src/Files/AffineFile.cxx#L144)

Contact

Tom Kirk, 2020. Institute of Biomedical Engineering, University of Oxford. thomas.kirk@eng.ox.ac.uk

Owner

  • Name: Tom Kirk
  • Login: tomfrankkirk
  • Kind: user
  • Location: London, UK

Biomedical engineer working in neuroimaging @physimals

Citation (CITATION.cff) 

cff-version: 1.2.0
message: "If you use this software, please cite it as below."
authors:
  - family-names: Kirk
    given-names: Thomas F.
    orcid: https://orcid.org/0000-0002-3458-2104
title: "Regtricks"
version: 0.3.4
date-released: 2022-01-05
url: https://github.com/tomfrankkirk/regtricks
doi: 10.5281/zenodo.7859541

GitHub Events

Total
Last Year

Committers

Last synced: about 3 years ago

All Time
  • Total Commits: 154
  • Total Committers: 4
  • Avg Commits per committer: 38.5
  • Development Distribution Score (DDS): 0.221
Top Committers
Name Email Commits
tomfrankkirk t****k@g****m 120
Tom t****m@D****l 18
Tom Kirk t****k@e****k 15
Tom Kirk 3****k@u****m 1
Committer Domains (Top 20 + Academic)
eng.ox.ac.uk: 1

Issues and Pull Requests

Last synced: 9 months ago

All Time
  • Total issues: 2
  • Total pull requests: 1
  • Average time to close issues: about 12 hours
  • Average time to close pull requests: less than a minute
  • Total issue authors: 1
  • Total pull request authors: 1
  • Average comments per issue: 1.0
  • Average comments per pull request: 0.0
  • Merged pull requests: 1
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 0
  • Pull requests: 0
  • Average time to close issues: N/A
  • Average time to close pull requests: N/A
  • Issue authors: 0
  • Pull request authors: 0
  • Average comments per issue: 0
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
  • jackt3 (2)
Pull Request Authors
  • tomfrankkirk (1)
Top Labels
Issue Labels
Pull Request Labels

Packages

  • Total packages: 1
  • Total downloads:
    • pypi 86 last-month
  • Total dependent packages: 0
  • Total dependent repositories: 2
  • Total versions: 19
  • Total maintainers: 2
pypi.org: regtricks

Tools for manipulating and applying registrations

  • Versions: 19
  • Dependent Packages: 0
  • Dependent Repositories: 2
  • Downloads: 86 Last month
Rankings
Dependent packages count: 10.1%
Dependent repos count: 11.6%
Average: 22.4%
Forks count: 22.7%
Stargazers count: 31.9%
Downloads: 35.8%
Maintainers (2)
elczkc tomfrankkirk
Last synced: 8 months ago

Dependencies

requirements.txt pypi
  • fslpy *
  • nibabel *
  • numpy *
  • scipy *
setup.py pypi