Sinaps
Sinaps: A Python library to simulate voltage dynamics and ionic electrodiffusion in neurons - Published in JOSS (2022)
Science Score: 95.0%
This score indicates how likely this project is to be science-related based on various indicators:
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○CITATION.cff file
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✓codemeta.json file
Found codemeta.json file -
✓.zenodo.json file
Found .zenodo.json file -
✓DOI references
Found 1 DOI reference(s) in JOSS metadata -
✓Academic publication links
Links to: joss.theoj.org -
✓Committers with academic emails
2 of 8 committers (25.0%) from academic institutions -
○Institutional organization owner
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✓JOSS paper metadata
Published in Journal of Open Source Software
Scientific Fields
Repository
Basic Info
- Host: GitHub
- Owner: ngltr
- License: other
- Language: Python
- Default Branch: master
- Homepage: http://sinaps.rtfd.io/
- Size: 38.2 MB
Statistics
- Stars: 4
- Watchers: 3
- Forks: 2
- Open Issues: 1
- Releases: 3
Metadata Files
README.md
SiNAPS
Sinaps is a Python package providing a fast, flexible and expressive tool to model signal propagation and ionic electrodiffusion in neurons. It is an efficient framework to build computational models of voltage and calcium dynamics. It is based on the Cable theory for voltage propagation, and the Nernst-Planck equation for the electrodiffusion of ions.
Figure 1 : Voltage propagation in neuron triggered by synaptic action potential
Documentation
See the documentation
Installation
Install the package:
pip install sinaps
Support
Please ask questions and submit bugs or feature requests on the
git-hub issue tracker: https://github.com/ngltr/sinaps/issues
Owner
- Name: Nicolas
- Login: ngltr
- Kind: user
- Repositories: 1
- Profile: https://github.com/ngltr
JOSS Publication
Sinaps: A Python library to simulate voltage dynamics and ionic electrodiffusion in neurons
Authors
Independent Researcher
CRM - IRL3457, LJAD Université Côte d'Azur
Editor
Marie E. Rognes
Tags
neuroscience voltage propagation calcium electrodiffusion cable theory Nernst-Planck equationsGitHub Events
Total
Last Year
Committers
Last synced: 5 months ago
Top Committers
| Name | Commits | |
|---|---|---|
| Claire Guerrier | c****r@g****m | 87 |
| Nicolas | 4****r | 74 |
| Claire | c****r@u****r | 25 |
| Nicolas Galtier | n****r@s****m | 6 |
| alligator48 | 4****8 | 2 |
| Claire | c****r@c****r | 2 |
| ´Marte Julie Sætra | m****5@h****m | 1 |
| Marte Julie Sætra | m****e@s****i | 1 |
Committer Domains (Top 20 + Academic)
Issues and Pull Requests
Last synced: 4 months ago
All Time
- Total issues: 9
- Total pull requests: 8
- Average time to close issues: 14 days
- Average time to close pull requests: 15 days
- Total issue authors: 2
- Total pull request authors: 3
- Average comments per issue: 0.78
- Average comments per pull request: 0.13
- Merged pull requests: 7
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 0
- Pull requests: 0
- Average time to close issues: N/A
- Average time to close pull requests: N/A
- Issue authors: 0
- Pull request authors: 0
- Average comments per issue: 0
- Average comments per pull request: 0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
- martejulie (8)
- meg-simula (1)
Pull Request Authors
- ngltr (5)
- martejulie (2)
- Fricker95 (1)
Top Labels
Issue Labels
Pull Request Labels
Dependencies
- datashader *
- hvplot *
- networkx *
- numba >=0.55
- numpy *
- pandas *
- param ==1.10.0
- quantiphy *
- scipy >=1.0.0
- tqdm *
- bokeh ==2.4.0
- ipykernel *
- matplotlib *
- myst-parser *
- nbsphinx *
- param *
- pillow >=7.1.0
- sphinx-book-theme *
- actions/checkout v2 composite
- actions/upload-artifact v1 composite
- openjournals/openjournals-draft-action master composite
- actions/checkout v2 composite
- actions/setup-python v2 composite
- actions/checkout v2 composite
- actions/setup-python v2 composite
- pypa/gh-action-pypi-publish 27b31702a0e7fc50959f5ad993c78deac1bdfc29 composite