Data

Tools

Indexes

Applications

Experiments

Open Source Science

https://github.com/bleekerlab/natural-insecticides-thrips-whiteflies

Data and figures for the natural insecticides paper

https://github.com/bleekerlab/natural-insecticides-thrips-whiteflies

Science Score: 10.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ○
    codemeta.json file
  • ○
    .zenodo.json file
  • ○
    DOI references
  • ✓
    Academic publication links
    Links to: zenodo.org
  • ○
    Academic email domains
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (6.0%) to scientific vocabulary
Last synced: 10 months ago · JSON representation

Repository

Data and figures for the natural insecticides paper

Basic Info
Statistics
  • Stars: 0
  • Watchers: 1
  • Forks: 0
  • Open Issues: 3
  • Releases: 0
Archived
Created about 7 years ago · Last pushed almost 5 years ago

https://github.com/BleekerLab/natural-insecticides-thrips-whiteflies/blob/master/ 

[![DOI](https://zenodo.org/badge/190165290.svg)](https://zenodo.org/badge/latestdoi/190165290)

# Data and code repository 
## "Natural variation in trichome-based anti-insect metabolites from wild tomato species"

Code and datasets are available

Eventually, all code and datasets used to generate the figures will be archived at the Zenodo repository (used by CERN). This will provide us with a link (DOI) that we can use in the methods section.  

# List of figures
## Figure list
Figures
-	Figure 1: Insect survival phenotypes on the collection of accessions
-	Figure 2: Glandular trichome phenotypes 
-	Figure 3: Heatmaps of GC-MS and UHPLC-MS detected metabolites
-	Figure 4: Significant metabolites in toxic-labelled accessions

## Tables
-	Table 1: Classification of the accessions
-	Table 2: List of acylsugars significantly contributing to the RF model
-	Table 3: List of volatiles significantly contributing to the RF model


## Supplemental tables 
- Table S1: Generalised Linear Model fitted on the whitefly survival data.
- Table S2: Cox proportional hazard model fitted on the thrips survival data
- Table S3: volatile and acylsugars identified in the stem trichomes of the 19 tomato genotypes. 

## Supplemental figures
-	Figure S1: Survival curves of thrips bioassay
-	Figure S2: Trichome photos of all 19 accessions
-	Figure S3: Trichome densities per trichome type and leaf surface
-	Figure S4: Frequency of metabolite detection among the accessions.
-	Figure S5: Mass spectra of volatiles that were not verified by an authentic standard
-	Figure S6: Detection of significant metabolites among the tomato accessions

Owner

  • Name: Petra Bleeker laboratory
  • Login: BleekerLab
  • Kind: organization
  • Email: P.M.Bleeker@uva.nl
  • Location: University of Amsterdam

Laboratory of Petra Bleeker at University of Amsterdam

GitHub Events

Total
Last Year