2021-paper-jupyter-reproducible-workflows

Using Jupyter for reproducible scientific workflows

https://github.com/marijanbeg/2021-paper-jupyter-reproducible-workflows

Science Score: 77.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • CITATION.cff file
    Found CITATION.cff file
  • codemeta.json file
    Found codemeta.json file
  • .zenodo.json file
    Found .zenodo.json file
  • DOI references
    Found 4 DOI reference(s) in README
  • Academic publication links
    Links to: arxiv.org, ieee.org, zenodo.org
  • Committers with academic emails
    1 of 1 committers (100.0%) from academic institutions
  • Institutional organization owner
  • JOSS paper metadata
  • Scientific vocabulary similarity
    Low similarity (9.7%) to scientific vocabulary

Keywords

binder bsd-3-clause computational-magnetism computational-mathematics horizon2020 jupyter linux macos magnetism mathematics micromagnetics opendreamkit paper physics python reproducibility scientific-workflows ubermag windows workflow
Last synced: 6 months ago · JSON representation ·

Repository

Using Jupyter for reproducible scientific workflows

Basic Info
  • Host: GitHub
  • Owner: marijanbeg
  • License: bsd-3-clause
  • Language: Jupyter Notebook
  • Default Branch: master
  • Homepage:
  • Size: 226 KB
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Topics
binder bsd-3-clause computational-magnetism computational-mathematics horizon2020 jupyter linux macos magnetism mathematics micromagnetics opendreamkit paper physics python reproducibility scientific-workflows ubermag windows workflow
Created about 5 years ago · Last pushed over 3 years ago
Metadata Files
Readme License Citation

README.md

Using Jupyter for reproducible scientific workflows

Marijan Beg1, Juliette Taka2, Thomas Kluyver3, Alexander Konovalov4, Min Ragan-Kelley5, Nicolas Thiéry6, and Hans Fangohr7

1 Faculty of Engineering and Physical Sciences, University of Southampton, Southampton SO17 1BJ, United Kingdom
2 Logilab, 75013 Paris, France
3 European XFEL GmbH, 22869 Schenefeld, Germany
4 School of Computer Science, University of St Andrews, St Andrews KY16 9AJ, United Kingdom
5 Simula Research Laboratory, 1364 Fornebu, Norway
6 Laboratoire de Recherche en Informatique, Université Paris-Saclay, CNRS, 91405 Orsay, France
7 Max Planck Institute for the Structure and Dynamics of Matter, 22761 Hamburg, Germany

| Description | Badge | | --- | --- | | Paper | Paper | | Preprint | Preprint | | Tests | Build status | | Binder | Binder | | License | License | | DOI | DOI |

About

This repository contains all the necessary data and information required to reproduce Figure 3 in:

Binder

You can run the Jupyter notebook in the cloud via Binder. To access Binder, use the badge in the table above.

License

Licensed under the BSD 3-Clause "New" or "Revised" License. For details, please refer to the LICENSE file.

How to cite

  1. M. Beg, J. Taka, T. Kluyver, A. Konovalov, M. Ragan-Kelley, N. Thiéry, and H. Fangohr. Using Jupyter for reproducible scientific workflows. Computing in Science & Engineering 23, 36 (2021).

  2. M. Beg, J. Taka, T. Kluyver, A. Konovalov, M. Ragan-Kelley, N. Thiéry, and H. Fangohr. Accompanying repository for "Using Jupyter for reproducible scientific workflows". GitHub: https://github.com/marijanbeg/2021-paper-jupyter-reproducible-workflows, DOI: 10.5281/zenodo.4382224 (2021).

Acknowledgments

  • OpenDreamKit – Horizon 2020 European Research Infrastructure project (676541)

  • EPSRC Programme Grant on Skyrmionics (EP/N032128/1)

Owner

  • Name: Marijan Beg
  • Login: marijanbeg
  • Kind: user
  • Location: London, United Kingdom
  • Company: Imperial College London

Computational Scientist

Citation (CITATION.cff)

cff-version: 1.2.0
message: "Please cite using the metadata from 'preferred-citation'."
type: software
authors:
  - given-names: Marijan
    family-names: Beg
    orcid: 'https://orcid.org/0000-0002-6670-3994'
  - given-names: Juliette
    family-names: Taka
  - given-names: Thomas
    family-names: Kluyver
    orcid: 'https://orcid.org/0000-0003-4020-6364'
  - given-names: Alexander
    family-names: Konovalov
    orcid: 'https://orcid.org/0000-0001-5299-3292'
  - given-names: Min
    family-names: Ragan-Kelley
  - given-names: Nicolas M.
    family-names: Thiéry
    orcid: 'https://orcid.org/0000-0002-2735-8921'
  - given-names: Hans
    family-names: Fangohr
    orcid: 'https://orcid.org/0000-0001-5494-7193'
title: Using Jupyter for Reproducible Scientific Workflows
repository-code: https://github.com/marijanbeg/2021-paper-jupyter-reproducible-workflows
identifiers:
  - type: doi
    value: 10.5281/zenodo.4382224
license: BSD-3-Clause
preferred-citation:
  type: article
  authors:
    - given-names: Marijan
      family-names: Beg
      orcid: 'https://orcid.org/0000-0002-6670-3994'
    - given-names: Juliette
      family-names: Taka
    - given-names: Thomas
      family-names: Kluyver
      orcid: 'https://orcid.org/0000-0003-4020-6364'
    - given-names: Alexander
      family-names: Konovalov
      orcid: 'https://orcid.org/0000-0001-5299-3292'
    - given-names: Min
      family-names: Ragan-Kelley
    - given-names: Nicolas M.
      family-names: Thiéry
      orcid: 'https://orcid.org/0000-0002-2735-8921'
    - given-names: Hans
      family-names: Fangohr
      orcid: 'https://orcid.org/0000-0001-5494-7193'
  title: Using Jupyter for Reproducible Scientific Workflows
  journal: "Computing in Science & Engineering"
  volume: 23
  issue: 36
  year: 2021
  identifiers:
    - type: doi
      value: 10.1109/MCSE.2021.3052101

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