phenomics-assistant
LLM retrieval augmented generation agent for the Monarch Knowledge graph.
Science Score: 44.0%
This score indicates how likely this project is to be science-related based on various indicators:
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✓CITATION.cff file
Found CITATION.cff file -
✓codemeta.json file
Found codemeta.json file -
✓.zenodo.json file
Found .zenodo.json file -
○DOI references
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○Academic publication links
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○Institutional organization owner
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○Scientific vocabulary similarity
Low similarity (4.1%) to scientific vocabulary
Keywords
Repository
LLM retrieval augmented generation agent for the Monarch Knowledge graph.
Basic Info
- Host: GitHub
- Owner: monarch-initiative
- License: mit
- Language: Python
- Default Branch: main
- Homepage: https://phenomics-assistant.streamlit.app/
- Size: 4.26 MB
Statistics
- Stars: 24
- Watchers: 4
- Forks: 1
- Open Issues: 4
- Releases: 2
Topics
Metadata Files
README.md
Phenomics Assistant
The Monarch Initiative has an extensive, cross-species, semantic knowledge graph. Phenomics Assistant is a user-friendly interface that uses large language models (LLMs) to enable natural-language interaction with the Monarch KG.
A demo version is available at https://phenomics-assistant.streamlit.app/
An experimental demo version supporting streaming and more sophisticated graph queries is available at https://phenomics-assistant2.streamlit.app/
Related repositories
This repository contains the Streamlit-based UI framework for Phenomics Assistant, interfacing with LLM-focused endpoints to the main Monarch API via an agent-based framework.
Owner
- Name: Monarch Initiative
- Login: monarch-initiative
- Kind: organization
- Location: Globally-distributed team (see https://monarchinitiative.org/page/team)
- Website: https://github.com/monarch-initiative/monarch-app/blob/master/README.md#about-monarch
- Repositories: 118
- Profile: https://github.com/monarch-initiative
Cross-species disease discovery and diagnosis
Citation (CITATION.cff)
cff-version: 1.2.0 message: "If you use this software, please cite it as below." authors: - family-names: "O'Neil" given-names: "Shawn" orcid: "https://orcid.org/0000-0001-6220-7080" - family-names: "Mungall" given-names: "Chris" orcid: "https://orcid.org/0000-0002-6601-2165" title: "monarch-assistant" version: 0.1.0 date-released: 2023-09-19 url: "https://github.com/monarch-initiative/monarch-assistant"
GitHub Events
Total
- Create event: 4
- Issues event: 1
- Release event: 1
- Watch event: 6
- Issue comment event: 2
- Push event: 31
- Fork event: 2
Last Year
- Create event: 4
- Issues event: 1
- Release event: 1
- Watch event: 6
- Issue comment event: 2
- Push event: 31
- Fork event: 2
Issues and Pull Requests
Last synced: 6 months ago
All Time
- Total issues: 5
- Total pull requests: 5
- Average time to close issues: about 10 hours
- Average time to close pull requests: 19 days
- Total issue authors: 4
- Total pull request authors: 3
- Average comments per issue: 0.4
- Average comments per pull request: 0.0
- Merged pull requests: 5
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 1
- Pull requests: 0
- Average time to close issues: N/A
- Average time to close pull requests: N/A
- Issue authors: 1
- Pull request authors: 0
- Average comments per issue: 0.0
- Average comments per pull request: 0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
- cmungall (1)
- sounkou-bioinfo (1)
- sagehrke (1)
- oneilsh (1)
Pull Request Authors
- oneilsh (4)
- cmungall (2)
- nlharris (2)
Top Labels
Issue Labels
Pull Request Labels
Dependencies
- 110 dependencies
- agent-smith-ai ^0.10.2
- python >=3.9,<3.9.7 || >3.9.7,<4.0
- streamlit ^1.26.0