Releases | Open Source Science

https://github.com/bluebrain/neurodamus - 3.7.2

What's Changed

[Release 3.7.2]: make sure sdist is also published by @heerener in https://github.com/BlueBrain/neurodamus/pull/229

Full Changelog: https://github.com/BlueBrain/neurodamus/compare/3.7.1...3.7.2

- Python
Published by WeinaJi over 1 year ago

https://github.com/bluebrain/neurodamus - 3.7.1

What's Changed

[Release 3.7.1]: fix publishing to PyPI by using trusted publisher by @WeinaJi in https://github.com/BlueBrain/neurodamus/pull/228

Full Changelog: https://github.com/BlueBrain/neurodamus/compare/3.7.0...3.7.1

- Python
Published by WeinaJi over 1 year ago

https://github.com/bluebrain/neurodamus - 3.7.0

What's Changed

Have a pre-stdinit hook, to be used by replace_axon by @ferdonline in https://github.com/BlueBrain/neurodamus/pull/189
Fix the Python 3.12 version inconsistency in GitHub actions cache by @WeinaJi in https://github.com/BlueBrain/neurodamus/pull/194
Switch astrocyte mod file from mcd to cadifus. by @WeinaJi in https://github.com/BlueBrain/neurodamus/pull/193
Crash test mode by @ferdonline in https://github.com/BlueBrain/neurodamus/pull/190
Pin Python versions by @ferdonline in https://github.com/BlueBrain/neurodamus/pull/196
Crash-test mode: Speed up synapse loading by @ferdonline in https://github.com/BlueBrain/neurodamus/pull/191
Synapse reading fixes by @ferdonline in https://github.com/BlueBrain/neurodamus/pull/197
Fix ReadtheDocs PR build failure by @WeinaJi in https://github.com/BlueBrain/neurodamus/pull/199
Fix multiple issues with Memory Load Balance for MMB run by @st4rl3ss in https://github.com/BlueBrain/neurodamus/pull/185
BBPBGLIB-1042 Don't return early from target_gids, enable intersection by @ferdonline in https://github.com/BlueBrain/neurodamus/pull/198
Migrate unit tests to GitHub by @WeinaJi in https://github.com/BlueBrain/neurodamus/pull/175
[REP-91] Avoid raising exception when point process is missing in a section by @jorblancoa in https://github.com/BlueBrain/neurodamus/pull/202
CoreNeuron Rebalancer by @ferdonline in https://github.com/BlueBrain/neurodamus/pull/206
ConnManager : Small readability improvements by @ferdonline in https://github.com/BlueBrain/neurodamus/pull/200
[BBPBGLIB-1059] Integrate Oren's gap junction compensation procedure into neurodamus by @WeinaJi in https://github.com/BlueBrain/neurodamus/pull/195
Fix: Avoid extraneous newline by @ferdonline in https://github.com/BlueBrain/neurodamus/pull/212
[BBPBGLIB-1184] Fix CoreNEURON reports restore functionality by @jorblancoa in https://github.com/BlueBrain/neurodamus/pull/210
Update docs for memory rebalance by @st4rl3ss in https://github.com/BlueBrain/neurodamus/pull/211
Rebalance tool: Fix record count. Enable using all files.dat entries by @ferdonline in https://github.com/BlueBrain/neurodamus/pull/213
Replace unmaintained docopt with docopt-ng by @matz-e in https://github.com/BlueBrain/neurodamus/pull/215
Fix issue #201: improve README by @WeinaJi in https://github.com/BlueBrain/neurodamus/pull/216
Fix Save/Restore coreneuroninput issue: create symlink to the save coreneuroninput folder by @WeinaJi in https://github.com/BlueBrain/neurodamus/pull/214
Replace the Sonata image with the recent neurodamus img by @ferdonline in https://github.com/BlueBrain/neurodamus/pull/217
Implement CLI --version by @ferdonline in https://github.com/BlueBrain/neurodamus/pull/218
Improve docs: for installation add link to neurodamus-models, others link to Wiki by @WeinaJi in https://github.com/BlueBrain/neurodamus/pull/219
Update DOI badge by @WeinaJi in https://github.com/BlueBrain/neurodamus/pull/220
Updated change log for 3.7.0 by @ferdonline in https://github.com/BlueBrain/neurodamus/pull/209

Full Changelog: https://github.com/BlueBrain/neurodamus/compare/3.6.0...3.7.0

- Python
Published by ferdonline over 1 year ago

https://github.com/bluebrain/neurodamus - 3.6.0

What's Changed

Read modifications list from libsonata API by @WeinaJi in https://github.com/BlueBrain/neurodamus/pull/181
[BBPBGLIB-975] Improved "signal" shot noise parameterization by @seirios in https://github.com/BlueBrain/neurodamus/pull/187
ChangeLog 3.6.0 by @jorblancoa in https://github.com/BlueBrain/neurodamus/pull/188

New Contributors

@seirios made their first contribution in https://github.com/BlueBrain/neurodamus/pull/187

Full Changelog: https://github.com/BlueBrain/neurodamus/compare/3.5.0...3.6.0

- Python
Published by jorblancoa almost 2 years ago

https://github.com/bluebrain/neurodamus - 3.5.0

What's Changed

Replay with NetCons in CoreNEURON as in NEURON by @WeinaJi in https://github.com/BlueBrain/neurodamus/pull/173
[BBPBGLIB-1167] Automatic balance loading and on-the-fly rebalance by @st4rl3ss in https://github.com/BlueBrain/neurodamus/pull/178
[BBPBGLIB-1175] Handle deleted sections correctly by @WeinaJi in https://github.com/BlueBrain/neurodamus/pull/182
Update ngv test to use V10 emodels by @WeinaJi in https://github.com/BlueBrain/neurodamus/pull/183
[BBPBGLIB-854] Implement a CLI option to run coreneuron in direct mode without writing model data to disk by @WeinaJi in https://github.com/BlueBrain/neurodamus/pull/100
Allow API configuration to preserve the axons during setup by @ferdonline in https://github.com/BlueBrain/neurodamus/pull/155
Change log 3.5.0 by @WeinaJi in https://github.com/BlueBrain/neurodamus/pull/184

Full Changelog: https://github.com/BlueBrain/neurodamus/compare/3.4.0...3.5.0

- Python
Published by WeinaJi almost 2 years ago

https://github.com/bluebrain/neurodamus - 3.4.0

What's Changed

[BBPBGLIB-1141] Remove HDF5reader.mod which is already replaced by libsonata by @WeinaJi in https://github.com/BlueBrain/neurodamus/pull/162
Optimize Dockerfile a bit by @matz-e in https://github.com/BlueBrain/neurodamus/pull/176
[BBPBGLIB-1152] Multi-cycle support for dry run estimate and instantiation by @st4rl3ss in https://github.com/BlueBrain/neurodamus/pull/171
Accurate synapse counts in dry-run (respect src target) by @ferdonline in https://github.com/BlueBrain/neurodamus/pull/169
Remove VecStim to use the version in neurodamus-models by @WeinaJi in https://github.com/BlueBrain/neurodamus/pull/177
Change log 3.4.0 by @WeinaJi in https://github.com/BlueBrain/neurodamus/pull/179

Full Changelog: https://github.com/BlueBrain/neurodamus/compare/3.3.0...3.4.0

- Python
Published by WeinaJi about 2 years ago

https://github.com/bluebrain/neurodamus - 3.3.0

What's Changed

[BBPBGLIB-1137] Account for nonzero total current when using SEClamp; allow nonzero total current when simulating physical electrodes by @joseph-tharayil in https://github.com/BlueBrain/neurodamus/pull/134
Fix record_spikes for load balancing by @WeinaJi in https://github.com/BlueBrain/neurodamus/pull/167
Cache dependent packages in GH actions workflow by @WeinaJi in https://github.com/BlueBrain/neurodamus/pull/166
Add tests for python 3.9 to 3.12 by @jorblancoa in https://github.com/BlueBrain/neurodamus/pull/124
Avoid calling cleanup from destructor by @ferdonline in https://github.com/BlueBrain/neurodamus/pull/168
Trigger workflow when pushing to main by @WeinaJi in https://github.com/BlueBrain/neurodamus/pull/172
Tests with subprocess should capture streams by @ferdonline in https://github.com/BlueBrain/neurodamus/pull/164
[BBPBGLIB-1158] Add empirical mechanism to estimate simulation memory usage by @st4rl3ss in https://github.com/BlueBrain/neurodamus/pull/165
[BBPBGLIB-1122] Removing legacy RNGs, leaving only Random123 by @atemerev in https://github.com/BlueBrain/neurodamus/pull/136
[BBPBGLIB-739] Override UTF-8 for logging by @atemerev in https://github.com/BlueBrain/neurodamus/pull/147
ChangeLog 3.3.0 by @WeinaJi in https://github.com/BlueBrain/neurodamus/pull/174

Full Changelog: https://github.com/BlueBrain/neurodamus/compare/3.2.1...3.3.0

- Python
Published by jorblancoa about 2 years ago

https://github.com/bluebrain/neurodamus - 3.2.1

What's Changed

Remove Report.hoc reference by @jorblancoa in https://github.com/BlueBrain/neurodamus/pull/158
[BBPBGLIB-1153] Allow disabling reports from SONATA config by @kbvw in https://github.com/BlueBrain/neurodamus/pull/159
Fix dead link from CONTRIBUTING.md to README.rst by @kbvw in https://github.com/BlueBrain/neurodamus/pull/160
[BBPBGLIB-1154] Add information about CORENEURONLIB in the Docker README by @WeinaJi in https://github.com/BlueBrain/neurodamus/pull/161
ChangeLog 3.2.1 by @WeinaJi in https://github.com/BlueBrain/neurodamus/pull/163

New Contributors

@kbvw made their first contribution in https://github.com/BlueBrain/neurodamus/pull/159

Full Changelog: https://github.com/BlueBrain/neurodamus/compare/3.2.0...3.2.1

- Python
Published by WeinaJi about 2 years ago

https://github.com/bluebrain/neurodamus - 3.2.0

What's Changed

[BBPBGLIB-1139] Missing exception logging on configuration errors by @atemerev in https://github.com/BlueBrain/neurodamus/pull/142
Clean up wheel contents. by @matz-e in https://github.com/BlueBrain/neurodamus/pull/144
Hotfix to solve crashes when running on certain amount of ranks by @st4rl3ss in https://github.com/BlueBrain/neurodamus/pull/141
[BBPGBLIB-1147] Fixes crashes with KeyError when running sonataconf-sscx-O1 circuit on dry run by @st4rl3ss in https://github.com/BlueBrain/neurodamus/pull/149
Replay with SONATA spikes files by @WeinaJi in https://github.com/BlueBrain/neurodamus/pull/150
Update docker file with the new data location by @WeinaJi in https://github.com/BlueBrain/neurodamus/pull/153
Update online-lfp.rst by @joseph-tharayil in https://github.com/BlueBrain/neurodamus/pull/152
[BBPBGLIB-1145] Write gids without offset in WholeCell LB complexity file by @jorblancoa in https://github.com/BlueBrain/neurodamus/pull/148
[BBPGLIB-1148] Add support for gap junctions in dry run by @st4rl3ss in https://github.com/BlueBrain/neurodamus/pull/151
[BBPBGLIB-1057] Replace Report.hoc by report.py by @jorblancoa in https://github.com/BlueBrain/neurodamus/pull/145
ChangeLog 3.2.0 by @WeinaJi in https://github.com/BlueBrain/neurodamus/pull/154

New Contributors

@joseph-tharayil made their first contribution in https://github.com/BlueBrain/neurodamus/pull/152

Full Changelog: https://github.com/BlueBrain/neurodamus/compare/3.1.1...3.2.0

- Python
Published by WeinaJi about 2 years ago

https://github.com/bluebrain/neurodamus - 3.1.1

What's Changed

Fix fetching error in GH workflow triggered by tag and ChangeLog for 3.1.1 by @WeinaJi in https://github.com/BlueBrain/neurodamus/pull/139

Full Changelog: https://github.com/BlueBrain/neurodamus/compare/3.1.0...3.1.1

- Python
Published by WeinaJi over 2 years ago

https://github.com/bluebrain/neurodamus - 3.1.0

What's Changed

Fix unit tests by @WeinaJi in https://github.com/BlueBrain/neurodamus/pull/119
[BBPBGLIB-1120] Remove node loaders for MVD3 and NCS by @WeinaJi in https://github.com/BlueBrain/neurodamus/pull/117
[BBPBGLIB-1124] Remove hoc targets related code by @jorblancoa in https://github.com/BlueBrain/neurodamus/pull/118
Remove SynapseReader.mod and SynReaderNRN by @WeinaJi in https://github.com/BlueBrain/neurodamus/pull/122
[BBPBGLIB-1110] Error now raised when executeConfigure is returned with errors by @atemerev in https://github.com/BlueBrain/neurodamus/pull/120
[BBPBGLIB-1127] Remove SpikeWriter.mod and out.dat by @jorblancoa in https://github.com/BlueBrain/neurodamus/pull/123
[BBPBGLIB-1102] Add load balance based on dry run estimate by @st4rl3ss in https://github.com/BlueBrain/neurodamus/pull/111
Use actions/checkout@v4 to use Node 20 by @alkino in https://github.com/BlueBrain/neurodamus/pull/126
StrEnum not working with older python versions by @jorblancoa in https://github.com/BlueBrain/neurodamus/pull/125
[BBPBGLIB-1121] Remove BlueConfig parser by @jorblancoa in https://github.com/BlueBrain/neurodamus/pull/127
[BBPBGLIB-1133] Remove ElectrodeManager.hoc and LookupTableV2.mod by @jorblancoa in https://github.com/BlueBrain/neurodamus/pull/128
[BBPBGLIB-1135] Move CompartmentMapping to python by @jorblancoa in https://github.com/BlueBrain/neurodamus/pull/133
[BBPBGLIB-1134] Move ShowProgress.hoc to python by @jorblancoa in https://github.com/BlueBrain/neurodamus/pull/131
[BBPBGLIB-1132]Replace StimulusManager.hoc with the python classes by @WeinaJi in https://github.com/BlueBrain/neurodamus/pull/132
On --debug install a hook for NGV to show neuro-glial "spikes" by @ferdonline in https://github.com/BlueBrain/neurodamus/pull/137
BBPGLIB-1102 Load memory balance from file by @st4rl3ss in https://github.com/BlueBrain/neurodamus/pull/129
[BBPBGLIB-1125] GH forkflow for building a wheel by @atemerev in https://github.com/BlueBrain/neurodamus/pull/121
ChangeLog for 3.1.0 by @WeinaJi in https://github.com/BlueBrain/neurodamus/pull/138

New Contributors

@alkino made their first contribution in https://github.com/BlueBrain/neurodamus/pull/126

Full Changelog: https://github.com/BlueBrain/neurodamus/compare/3.0.0...3.1.0

- Python
Published by WeinaJi over 2 years ago

https://github.com/bluebrain/neurodamus - 3.0.0

What's Changed

Transform setup.py to pyproject.toml by @WeinaJi in https://github.com/BlueBrain/neurodamus/pull/110
Deprecate BlueConfig p1: Raise errors for BlueConfig configuration files by @WeinaJi in https://github.com/BlueBrain/neurodamus/pull/101
Remove dependency on mvdtool by @WeinaJi in https://github.com/BlueBrain/neurodamus/pull/112
[BBPBGLIB-1114] Apply offset to the gids before reading node file by @jorblancoa in https://github.com/BlueBrain/neurodamus/pull/113
Read synapse parameters in a collective safe manner. by @1uc in https://github.com/BlueBrain/neurodamus/pull/85
[BBPBGLIB-1115] Fix issue with summation reports and cell target in NEURON by @jorblancoa in https://github.com/BlueBrain/neurodamus/pull/114
Atemerev/opts config by @atemerev in https://github.com/BlueBrain/neurodamus/pull/115
ChangeLog for 3.0.0 by @WeinaJi in https://github.com/BlueBrain/neurodamus/pull/116

New Contributors

@atemerev made their first contribution in https://github.com/BlueBrain/neurodamus/pull/115

Full Changelog: https://github.com/BlueBrain/neurodamus/compare/2.17.0...3.0.0

- Python
Published by WeinaJi over 2 years ago

https://github.com/bluebrain/neurodamus - 3.0.0-alpha

What's Changed

Transform setup.py to pyproject.toml by @WeinaJi in https://github.com/BlueBrain/neurodamus/pull/110
Deprecate BlueConfig p1: Raise errors for BlueConfig configuration files by @WeinaJi in https://github.com/BlueBrain/neurodamus/pull/101
Remove dependency on mvdtool by @WeinaJi in https://github.com/BlueBrain/neurodamus/pull/112

Full Changelog: https://github.com/BlueBrain/neurodamus/compare/2.17.0...3.0.0-alpha

- Python
Published by WeinaJi over 2 years ago

https://github.com/bluebrain/neurodamus - 2.17.0

What's Changed

Fix docs by @heerener in https://github.com/BlueBrain/neurodamus/pull/84
Update build_neurodamus.sh with --only-neuron by @iomaganaris in https://github.com/BlueBrain/neurodamus/pull/89
Fix bug with duplicate count of synapses by @ferdonline in https://github.com/BlueBrain/neurodamus/pull/87
[BBPBGLIB-1097] Reorganization of unit/integration tests by @ferdonline in https://github.com/BlueBrain/neurodamus/pull/83
Build recipe: remove shallow clone to meet the version requirement of latest setuptools by @WeinaJi in https://github.com/BlueBrain/neurodamus/pull/90
Implement chunking mechanism for loading synapses in dryrun mode by @st4rl3ss in https://github.com/BlueBrain/neurodamus/pull/88
[BBPBGLIB-1092] Add unit tests for CLI options by @jorblancoa in https://github.com/BlueBrain/neurodamus/pull/86
CI fix for python setup.py egg_info error by @ferdonline in https://github.com/BlueBrain/neurodamus/pull/95
Fast & lightweight dry run by @ferdonline in https://github.com/BlueBrain/neurodamus/pull/91
[BBPBGLIB-1027] Fix: Load Balance with multi-populations by @ferdonline in https://github.com/BlueBrain/neurodamus/pull/92
Fix unit test: new morphology test file to fulfil MorphIO change by @WeinaJi in https://github.com/BlueBrain/neurodamus/pull/104
Fix call to trim_memory on non-GNU C libraries by @JCGoran in https://github.com/BlueBrain/neurodamus/pull/106
Fix memory usage reporting on MacOS by @JCGoran in https://github.com/BlueBrain/neurodamus/pull/105
Fix netstim_inhpoisson.mod for CoreNEURON direct mode by @iomaganaris in https://github.com/BlueBrain/neurodamus/pull/94
Modernize the setup infractructure slightly. by @matz-e in https://github.com/BlueBrain/neurodamus/pull/98
Update documentation for new synapse estimate algorithm by @st4rl3ss in https://github.com/BlueBrain/neurodamus/pull/99
CoreConfig: writereportcount() should always create a new report.conf by @jorblancoa in https://github.com/BlueBrain/neurodamus/pull/107
[BBPBGLIB-1093] Move scientific tests from blueconfigs by @jorblancoa in https://github.com/BlueBrain/neurodamus/pull/103
Changelog for 2.17.0 by @WeinaJi in https://github.com/BlueBrain/neurodamus/pull/108

New Contributors

@JCGoran made their first contribution in https://github.com/BlueBrain/neurodamus/pull/106
@matz-e made their first contribution in https://github.com/BlueBrain/neurodamus/pull/98

Full Changelog: https://github.com/BlueBrain/neurodamus/compare/2.16.6...2.17.0

- Python
Published by WeinaJi over 2 years ago

https://github.com/bluebrain/neurodamus - 2.16.6

What's Changed

Workflow rule: CICOMMITTAG by @heerener in https://github.com/BlueBrain/neurodamus/pull/74
Manual container versions by @heerener in https://github.com/BlueBrain/neurodamus/pull/72
Added global integration tests for dryrun workflow by @st4rl3ss in https://github.com/BlueBrain/neurodamus/pull/73
protect numpy.concatenate empty tuple in getlocalgids by @WeinaJi in https://github.com/BlueBrain/neurodamus/pull/53
Container fixes by @heerener in https://github.com/BlueBrain/neurodamus/pull/75
[BBPP134-1022] Handling exceptions from NEURON during emodel loading by @WeinaJi in https://github.com/BlueBrain/neurodamus/pull/80
Use default dt value of NEURON in WholeCell load balancing by @iomaganaris in https://github.com/BlueBrain/neurodamus/pull/81
Fix conversion from sonata parameter to neurodamus internal key : amp_cv -> AmpCV by @WeinaJi in https://github.com/BlueBrain/neurodamus/pull/79
Updated changelog for 2.16.6 by @iomaganaris in https://github.com/BlueBrain/neurodamus/pull/82

Full Changelog: https://github.com/BlueBrain/neurodamus/compare/2.16.5...2.16.6

- Python
Published by WeinaJi over 2 years ago

https://github.com/bluebrain/neurodamus - 2.16.5

What's Changed

Memory estimation improvements by @ferdonline in https://github.com/BlueBrain/neurodamus/pull/56
Add report dt to the logging by @jorblancoa in https://github.com/BlueBrain/neurodamus/pull/59
Update unit test references by @jorblancoa in https://github.com/BlueBrain/neurodamus/pull/61
[BBPBGLIB-1067] Implement 'nodesetsfile' resolution order by @jorblancoa in https://github.com/BlueBrain/neurodamus/pull/55
Refactor dry run stats to its own class. Fixed logic to count synapses by @ferdonline in https://github.com/BlueBrain/neurodamus/pull/60
[HPCTM-1824] Introducing a temporary set for faster lookup in the src_target gids by @jorblancoa in https://github.com/BlueBrain/neurodamus/pull/63
[BBPBGLIB-1055] Support "" as nrnPath by @jorblancoa in https://github.com/BlueBrain/neurodamus/pull/65
Remove ranks-cpus warning as can be inaccurate by @1uc in https://github.com/BlueBrain/neurodamus/pull/66
[BBPBGLIB-1044] Use libsonata to read the spikes by @jorblancoa in https://github.com/BlueBrain/neurodamus/pull/70
[BBPBGLIB-1069] Added nodes suggestions and more improvements by @st4rl3ss in https://github.com/BlueBrain/neurodamus/pull/64
BBPBGLIB-1076 Make all edge managers set load_offsets at init by @ferdonline in https://github.com/BlueBrain/neurodamus/pull/69

Full Changelog: https://github.com/BlueBrain/neurodamus/compare/2.16.4...2.16.5

- Python
Published by ferdonline over 2 years ago

https://github.com/bluebrain/neurodamus - 2.16.4

What's Changed

Modernize ALU. by @1uc in https://github.com/BlueBrain/neurodamus/pull/48
[HPCTM-1793] Add a Dockerfile for building neurodamus image by @WeinaJi in https://github.com/BlueBrain/neurodamus/pull/44
Build docker images on gitlab by @heerener in https://github.com/BlueBrain/neurodamus/pull/45 and https://github.com/BlueBrain/neurodamus/pull/52
Run the simulation test nightly instead of on PRs and main by @heerener in https://github.com/BlueBrain/neurodamus/pull/54
BBPBGLIB-1061 SONATA conf: Dont map to internal connectivity by @ferdonline in https://github.com/BlueBrain/neurodamus/pull/43
[BBPBGLIB-556] Full estimate of memory consumption by @st4rl3ss in https://github.com/BlueBrain/neurodamus/pull/32
[BBPBGLIB-1042] GapJunctionManager: filter source target by population by @WeinaJi in https://github.com/BlueBrain/neurodamus/pull/42

Full Changelog: https://github.com/BlueBrain/neurodamus/compare/2.16.3...2.16.4

- Python
Published by ferdonline almost 3 years ago

https://github.com/bluebrain/neurodamus - 2.16.3

What's Changed

Share GluSynapseHelper.hoc with public users by @WeinaJi in https://github.com/BlueBrain/neurodamus/pull/47
Read 'electrodes_file' field from libsonata by @jorblancoa in https://github.com/BlueBrain/neurodamus/pull/23
ci git clone set --depth=1 by @anilbey in https://github.com/BlueBrain/neurodamus/pull/46
Print statistics of nodewise memory usage. by @1uc in https://github.com/BlueBrain/neurodamus/pull/29
[BBPBGLIB-1060] Remove CoreConfig.mod and enable CoreNEURON execution via NEURON Python API by @iomaganaris in https://github.com/BlueBrain/neurodamus/pull/41
Update changelog for 2.16.3 version by @iomaganaris in https://github.com/BlueBrain/neurodamus/pull/50

New Contributors

@jorblancoa made their first contribution in https://github.com/BlueBrain/neurodamus/pull/23
@anilbey made their first contribution in https://github.com/BlueBrain/neurodamus/pull/46
@1uc made their first contribution in https://github.com/BlueBrain/neurodamus/pull/29

Full Changelog: https://github.com/BlueBrain/neurodamus/compare/2.16.2...2.16.3

- Python
Published by WeinaJi almost 3 years ago

https://github.com/bluebrain/neurodamus - 2.16.2

What's Changed

Skip CORENEURON unit tests pending for a fix from NEURON by @WeinaJi in https://github.com/BlueBrain/neurodamus/pull/38
Use 0-based gid for reading GlioVascular sonata edges file by @WeinaJi in https://github.com/BlueBrain/neurodamus/pull/28
Propagate the log level correctly from the CLI option to Neurodamus class by @WeinaJi in https://github.com/BlueBrain/neurodamus/pull/31
import h5py in the function call to filter numpy warnings by @WeinaJi in https://github.com/BlueBrain/neurodamus/pull/37
ChangeLog for 2.16.2 by @WeinaJi in https://github.com/BlueBrain/neurodamus/pull/40

Full Changelog: https://github.com/BlueBrain/neurodamus/compare/2.16.1...2.16.2

- Python
Published by WeinaJi almost 3 years ago

https://github.com/bluebrain/neurodamus - 2.16.1

What's Changed

[BBPBGLIB-1044] Sonata Replay by @ferdonline in https://github.com/BlueBrain/neurodamus/pull/8
Update CoreConfig.mod for latest CoreNEURON changes by @olupton in https://github.com/BlueBrain/neurodamus/pull/18
[BBPBGLIB-1030] Reject *.sonata nodes and edges file by @WeinaJi in https://github.com/BlueBrain/neurodamus/pull/19
Copy open source required doc files from branch publication/nbS1-2023 into main by @WeinaJi in https://github.com/BlueBrain/neurodamus/pull/20
[BBPBGLIB-712] Estimate memory usage for synapse and connection by @st4rl3ss in https://github.com/BlueBrain/neurodamus/pull/22
Breaking enable_reports into pieces by @ferdonline in https://github.com/BlueBrain/neurodamus/pull/24
[NOTICKET] Add PR template by @ferdonline in https://github.com/BlueBrain/neurodamus/pull/25
[BBPBGLIB-851]Warning on caoCR if not the same as extracellularcalcium by @WeinaJi in https://github.com/BlueBrain/neurodamus/pull/26
use libsonata API to read the keys by @WeinaJi in https://github.com/BlueBrain/neurodamus/pull/30
Preserve the order of stimulus injection & CI fix by @iomaganaris in https://github.com/BlueBrain/neurodamus/pull/33
From Sonata 0-based spikes to 1-based by @ferdonline in https://github.com/BlueBrain/neurodamus/pull/35
Update change log for 2.16.1 by @WeinaJi in https://github.com/BlueBrain/neurodamus/pull/36

New Contributors

@olupton made their first contribution in https://github.com/BlueBrain/neurodamus/pull/18
@WeinaJi made their first contribution in https://github.com/BlueBrain/neurodamus/pull/19
@st4rl3ss made their first contribution in https://github.com/BlueBrain/neurodamus/pull/22
@iomaganaris made their first contribution in https://github.com/BlueBrain/neurodamus/pull/33

Full Changelog: https://github.com/BlueBrain/neurodamus/compare/2.16.0...2.16.1

- Python
Published by WeinaJi almost 3 years ago

https://github.com/bluebrain/neurodamus - Release for the 2023 nbS1 physiology publication

- Python
Published by WeinaJi about 3 years ago

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