Data

Tools

Indexes

Applications

Experiments

Open Source Science

https://github.com/bluebrain/me-types-mapper

https://github.com/bluebrain/me-types-mapper

Science Score: 67.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ✓
    DOI references
    Found 2 DOI reference(s) in README
  • ✓
    Academic publication links
    Links to: biorxiv.org
  • ✓
    Committers with academic emails
    2 of 3 committers (66.7%) from academic institutions
  • ✓
    Institutional organization owner
    Organization bluebrain has institutional domain (portal.bluebrain.epfl.ch)
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (7.4%) to scientific vocabulary
Last synced: 10 months ago · JSON representation

Repository

Basic Info
Statistics
  • Stars: 2
  • Watchers: 5
  • Forks: 1
  • Open Issues: 0
  • Releases: 0
Created over 4 years ago · Last pushed almost 2 years ago
Metadata Files
Readme License Authors

README.md

me-types-mapper

Description:

me-types-mapper is a python package that propose a probabilistic mapping between cell types from two different datasets based on shared morpho-electrical features. You can see an application here: https://www.biorxiv.org/content/10.1101/2021.11.24.469815v1

Installation:

run pip install git+https://github.com/BlueBrain/me-types-mapper.git

Examples:

The jupyter notebook in the Examples directory provides a first overview on how to use me-types-mapper.

Citation

When you use the me-types-mapper software, we ask you to cite the following: https://www.biorxiv.org/content/10.1101/2021.11.24.469815v1

Funding & Acknowledgment:

The development of this software was supported by funding to the Blue Brain Project, a research center of the École polytechnique fédérale de Lausanne (EPFL), from the Swiss government’s ETH Board of the Swiss Federal Institutes of Technology.

Copyright (c) 2022-2022 Blue Brain Project/EPFL

Owner

  • Name: The Blue Brain Project
  • Login: BlueBrain
  • Kind: organization
  • Email: bbp.opensource@epfl.ch
  • Location: Geneva, Switzerland

Open Source Software produced and used by the Blue Brain Project

GitHub Events

Total
  • Fork event: 1
Last Year
  • Fork event: 1

Committers

Last synced: 11 months ago

All Time
  • Total Commits: 22
  • Total Committers: 3
  • Avg Commits per committer: 7.333
  • Development Distribution Score (DDS): 0.182
Past Year
  • Commits: 11
  • Committers: 1
  • Avg Commits per committer: 11.0
  • Development Distribution Score (DDS): 0.0
Top Committers
Name Email Commits
yann.roussel y****l@e****h 18
alex4200 a****z@e****h 3
YannRoussel 4****l 1
Committer Domains (Top 20 + Academic)
epfl.ch: 2

Issues and Pull Requests

Last synced: 11 months ago

All Time
  • Total issues: 0
  • Total pull requests: 3
  • Average time to close issues: N/A
  • Average time to close pull requests: 7 days
  • Total issue authors: 0
  • Total pull request authors: 2
  • Average comments per issue: 0
  • Average comments per pull request: 0.0
  • Merged pull requests: 3
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 0
  • Pull requests: 0
  • Average time to close issues: N/A
  • Average time to close pull requests: N/A
  • Issue authors: 0
  • Pull request authors: 0
  • Average comments per issue: 0
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
Pull Request Authors
  • alex4200 (2)
  • bbpgithubaudit (1)
Top Labels
Issue Labels
Pull Request Labels

Dependencies

requirements.txt pypi
  • MorphIO >=3.3.2
  • matplotlib >=3.3.4
  • networkx >=2.6.3
  • neurom >=3.0.1
  • numpy >=1.18.5
  • pandas >=0.25.3
  • scipy >=1.5.4
docs/requirements.txt pypi
  • sphinx >=2.0.0
  • sphinx-autorun *
  • sphinx-bluebrain-theme *
setup.py pypi