https://github.com/bluebrain/atlas-densities - v0.2.3

What's Changed

• remove pkg_resources, use importlib by @mgeplf in https://github.com/BlueBrain/atlas-densities/pull/62
• Drop literature values from regions that are not in hierarchy or not in the annotation volume by @drodarie in https://github.com/BlueBrain/atlas-densities/pull/61

Full Changelog: https://github.com/BlueBrain/atlas-densities/compare/v0.2.2...v0.2.3

- Python
Published by mgeplf over 2 years ago

https://github.com/bluebrain/atlas-densities - v0.2.2

• add atlas-densities combination manipulate

- Python
Published by mgeplf over 2 years ago

https://github.com/bluebrain/atlas-densities - v0.2.1

The following cell-density sub-commands can now optionally take a --group-ids-config-path: cell-density, glia-cell-densities, inhibitory-and-excitatory-neuron-densities, fit-average-densities

Otherwise they use the default config for the AIBS atlas.

- Python
Published by mgeplf over 2 years ago

https://github.com/bluebrain/atlas-densities - v0.2.0

Update atlas-density creation to be more universal * Update the probability map to support regions * Simplify the create-from-probability-map API * Compute densities in parallel * Support multiple probability maps * Add output metadata

- Python
Published by mgeplf almost 3 years ago

https://github.com/bluebrain/atlas-densities - v0.1.5

Updates

• Update excitatory split section (#30)
• Show progress of the long measurements-to-average-densities process (#20)
• Do not modify input labels in density filenames (#32)

- Python
Published by mgeplf about 3 years ago

https://github.com/bluebrain/atlas-densities - v0.1.4

• Density placement: Force scaling on voxels that are not full. Fix #27. (#28)
• splitintohalves existed in atlas_commons; remove the copy here (#26)
• Restrict ISH slice positions that are inside the volume_mask volume. (#25)

- Python
Published by mgeplf over 3 years ago

https://github.com/bluebrain/atlas-densities - v0.1.3

• Add excitatory split

- Python
Published by mgeplf over 3 years ago

https://github.com/bluebrain/atlas-densities - v0.1.2

• Split mandatory ccfv2 fibers and cell containing regions combination from ccfv3 / ccfv2 annotation combination
• Add normalization and cell overlapping of Nissl and ISH dataset to match Erö's pipeline.
• Fix glia cell density placement, prevent negative densities.
• Add purely inhibitory regions for Erö's method to match model from 2019.
• Fix masks for cerebellar cortex, molecular and cortex L1 and related test.
• Update Roussel et al.'s pipeline to match the implementation from the paper. Htr3a is now split into vip and lamp5.

- Python
Published by mgeplf almost 4 years ago

https://github.com/bluebrain/atlas-densities - v0.1.1 OSS Release

OSS Release

- Python
Published by mgeplf over 4 years ago