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Open Source Science

https://github.com/bluebrain/bluenaas-singlecell

BlueNaaS Single Cell

https://github.com/bluebrain/bluenaas-singlecell

Science Score: 57.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ✓
    DOI references
    Found 3 DOI reference(s) in README
  • ✓
    Academic publication links
    Links to: zenodo.org
  • ○
    Academic email domains
  • ✓
    Institutional organization owner
    Organization bluebrain has institutional domain (portal.bluebrain.epfl.ch)
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (10.8%) to scientific vocabulary

Keywords

emodel experiment neuron
Last synced: 5 months ago · JSON representation

Repository

BlueNaaS Single Cell

Basic Info
  • Host: GitHub
  • Owner: BlueBrain
  • License: apache-2.0
  • Language: JavaScript
  • Default Branch: main
  • Homepage:
  • Size: 2.23 MB
Statistics
  • Stars: 1
  • Watchers: 6
  • Forks: 4
  • Open Issues: 1
  • Releases: 1
Archived
Topics
emodel experiment neuron
Created over 3 years ago · Last pushed 12 months ago
Metadata Files
Readme Contributing License Authors

README.md

[!WARNING] The Blue Brain Project concluded in December 2024, so development has ceased under the BlueBrain GitHub organization. Future development will take place at: https://github.com/openbraininstitute/BlueNaaS-SingleCell

BlueNaaS-SingleCell

Blue-Neuroscience-as-a-Service-SingleCell is an open source web application. It enables users to quickly visualize single cell model morphologies in 3D or as a dendrogram. Using a simple web user interface, single cell simulations can be easily configured and launched, producing voltage traces from selected compartments.

Examples

You can use the application on the EBRAINS platform at https://ebrains-cls-interactive.github.io/online-use-cases.html by selecting "Single Cell InSilico Experiments". You can also follow this direct link.

Documentation

The user documentation for the service can be found here.

Build frontend/backend dev images

bash make build

Run dev frontend/backend

bash make run_dev_frontend & make run_dev_backend &

Citation

When you use the BlueNaaS-SingleCell software, we ask you to cite the following: DOI

Funding & Acknowledgment

The development of this software was supported by funding to the Blue Brain Project, a research center of the École polytechnique fédérale de Lausanne (EPFL), from the Swiss government's ETH Board of the Swiss Federal Institutes of Technology and from the Human Brain Project's Specific Grant Agreement 3.

Copyright (c) 2022-2024 Blue Brain Project/EPFL

Owner

  • Name: The Blue Brain Project
  • Login: BlueBrain
  • Kind: organization
  • Email: bbp.opensource@epfl.ch
  • Location: Geneva, Switzerland

Open Source Software produced and used by the Blue Brain Project

GitHub Events

Total
  • Fork event: 1
Last Year
  • Fork event: 1

Issues and Pull Requests

Last synced: over 1 year ago

All Time
  • Total issues: 0
  • Total pull requests: 8
  • Average time to close issues: N/A
  • Average time to close pull requests: about 5 hours
  • Total issue authors: 0
  • Total pull request authors: 5
  • Average comments per issue: 0
  • Average comments per pull request: 0.88
  • Merged pull requests: 7
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 0
  • Pull requests: 5
  • Average time to close issues: N/A
  • Average time to close pull requests: 3 minutes
  • Issue authors: 0
  • Pull request authors: 3
  • Average comments per issue: 0
  • Average comments per pull request: 1.4
  • Merged pull requests: 4
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
Pull Request Authors
  • stefanoantonel (6)
  • bbpgithubaudit (2)
  • ASVG (2)
  • genric (1)
  • 915-Misan-Teodora (1)
Top Labels
Issue Labels
Pull Request Labels

Dependencies

backend/Dockerfile docker
  • python 3.12-slim build
frontend/Dockerfile docker
  • alpine 3.20 build
  • node 20-alpine build
frontend/package-lock.json npm
  • 583 dependencies
frontend/package.json npm
  • @babel/plugin-proposal-decorators ^7.20.5 development
  • @babel/polyfill ^7.12.1 development
  • @babel/preset-env ^7.20.2 development
  • aurelia-webpack-plugin ^5.0.4 development
  • babel-loader ^8.3.0 development
  • copy-webpack-plugin ^11.0.0 development
  • css-loader ^6.7.3 development
  • file-loader ^6.2.0 development
  • html-loader ^4.2.0 development
  • html-webpack-plugin ^5.5.0 development
  • mini-css-extract-plugin ^2.7.2 development
  • postcss-loader ^7.0.2 development
  • raw-loader ^4.0.2 development
  • style-loader ^3.3.1 development
  • terser-webpack-plugin ^5.3.6 development
  • url-loader ^4.1.1 development
  • webpack ^5.75.0 development
  • webpack-cli ^4.10.0 development
  • webpack-dev-server ^4.11.1 development
  • webpack-merge ^5.8.0 development
  • @tweenjs/tween.js ^18.6.4
  • aurelia-animator-css ^1.0.4
  • aurelia-bootstrapper ^2.4.0
  • aurelia-ui-framework github:genric/aurelia-ui-framework
  • bootstrap ^5.2.3
  • dygraphs ^2.1.0
  • file-saver ^2.0.5
  • font-awesome ^4.7.0
  • html2canvas ^1.4.1
  • jquery ^3.6.3
  • three ^0.142.0
backend/setup.py pypi