https://github.com/bluebrain/bluepyopt-test
Science Score: 13.0%
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○CITATION.cff file
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○.zenodo.json file
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○Scientific vocabulary similarity
Low similarity (7.2%) to scientific vocabulary
Repository
Basic Info
- Host: GitHub
- Owner: BlueBrain
- License: apache-2.0
- Language: AGS Script
- Default Branch: main
- Size: 223 KB
Statistics
- Stars: 0
- Watchers: 1
- Forks: 1
- Open Issues: 0
- Releases: 0
Metadata Files
README.md
BluePyOpt Test Repository
This repository provides a basic test to verify if BluePyOpt is installed correctly and functioning as expected. It's handy when verifying installations on clusters.
Requirements
See BluePyOpt installation for more details. Main dependencies are:
Usage
Execute the test script:
```bash
!/bin/bash
SBATCH --ntasks=6
SBATCH --partition=prod
SBATCH --job-name=bluepyopt_test
SBATCH --time=00:10:00
SBATCH --account=proj16
PWD=$(pwd) LOGS=$PWD/logs/${SLURM_JOBID} mkdir -p $LOGS
just to use modules if you have
module purge module load unstable python-dev py-bluepyopt neuron
compile mod files
rm -rf x86_64 nrnivmodl mechanisms
ipython settings
export IPYTHONDIR=${PWD}/.ipython export IPYTHONPROFILE=benchmark.${SLURMJOBID}
start controller and engines
ipcontroller --init --ip='*' --ping=30000 --profile=${IPYTHONPROFILE} & sleep 5 srun --output="${LOGS}/engine.out" ipengine --timeout=300 --profile=${IPYTHONPROFILE} & sleep 5
launch small test
maxngen=2 offspringsize=6 python opt.py --checkpoint="${LOGS}/run.pkl" --maxngen=$maxngen --offspringsize=$offspringsize ```
License
See LICENSE file.
Funding
This project/research was supported by funding to the Blue Brain Project, a research center of the École polytechnique fédérale de Lausanne (EPFL), from the Swiss government’s ETH Board of the Swiss Federal Institutes of Technology.
Copyright (c) 2020-2024 Blue Brain Project/EPFL
Owner
- Name: The Blue Brain Project
- Login: BlueBrain
- Kind: organization
- Email: bbp.opensource@epfl.ch
- Location: Geneva, Switzerland
- Website: https://portal.bluebrain.epfl.ch/
- Repositories: 226
- Profile: https://github.com/BlueBrain
Open Source Software produced and used by the Blue Brain Project
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- Public event: 1
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- Public event: 1
- Fork event: 1