Data

Tools

Indexes

Applications

Experiments

Open Source Science

https://github.com/bluebrain/me-model-analysis

https://github.com/bluebrain/me-model-analysis

Science Score: 13.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ○
    .zenodo.json file
  • ○
    DOI references
  • ○
    Academic publication links
  • ○
    Academic email domains
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (9.0%) to scientific vocabulary

Keywords

analyze emodel
Last synced: 9 months ago · JSON representation

Repository

Basic Info
  • Host: GitHub
  • Owner: BlueBrain
  • License: apache-2.0
  • Language: Python
  • Default Branch: main
  • Homepage:
  • Size: 51.8 KB
Statistics
  • Stars: 1
  • Watchers: 3
  • Forks: 1
  • Open Issues: 0
  • Releases: 0
Archived
Topics
analyze emodel
Created about 2 years ago · Last pushed over 1 year ago
Metadata Files
Readme License Authors

README.md

[!WARNING] The Blue Brain Project concluded in December 2024, so development has ceased under the BlueBrain GitHub organization. Future development will take place at: https://github.com/openbraininstitute/me-model-analysis

me-model-analysis

Repo that contains the code to run me-model-analysis using on-demand service in AWS

  • It will be deployed in the docker hub image bluebrain/me-model-analysis
  • It will be consumed by the frontend when we launch a validation of the single cell me-model.
  • It will use the on-demand service in AWS

Build package

bash make docker_build

Push package

You need the proper dockerhub credentials ```bash ORIGINALIMG="me-model-analysis:dev" ENDIMG="bluebrain/me-model-analysis:latest"

docker tag $ORIGINALIMG $ENDIMG docker push $END_IMG ```

Examples

```js const ws = new Ws(MEMODELONDEMANDSVCAPIGATEWAYURL, TOKEN); ws.send('setmodel', { modelid: MODELID }); // me-model id

// You might receive "Retry later" message back until the service is up // so you need to try again and again until you get "Processing message".

// Once the model is downloaded and ready you will get "setmodeldone" message. // after this you can just start the analysis ws.send('run_analysis', {});

// this process will update the me-model Nexus entity. ```

Acknowledgment

The development of this software was supported by funding to the Blue Brain Project, a research center of the École polytechnique fédérale de Lausanne (EPFL), from the Swiss government’s ETH Board of the Swiss Federal Institutes of Technology.

Copyright

Copyright (c) 2024 Blue Brain Project/EPFL

This work is licensed under Apache 2.0

Owner

  • Name: The Blue Brain Project
  • Login: BlueBrain
  • Kind: organization
  • Email: bbp.opensource@epfl.ch
  • Location: Geneva, Switzerland

Open Source Software produced and used by the Blue Brain Project

GitHub Events

Total
  • Watch event: 1
  • Push event: 1
  • Fork event: 1
Last Year
  • Watch event: 1
  • Push event: 1
  • Fork event: 1

Issues and Pull Requests

Last synced: over 1 year ago

All Time
  • Total issues: 0
  • Total pull requests: 5
  • Average time to close issues: N/A
  • Average time to close pull requests: 4 days
  • Total issue authors: 0
  • Total pull request authors: 2
  • Average comments per issue: 0
  • Average comments per pull request: 0.0
  • Merged pull requests: 5
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 0
  • Pull requests: 5
  • Average time to close issues: N/A
  • Average time to close pull requests: 4 days
  • Issue authors: 0
  • Pull request authors: 2
  • Average comments per issue: 0
  • Average comments per pull request: 0.0
  • Merged pull requests: 5
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
Pull Request Authors
  • pgetta (5)
  • stefanoantonel (2)
Top Labels
Issue Labels
Pull Request Labels

Dependencies

Dockerfile docker
  • python 3.12-slim build
setup.py pypi