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https://github.com/bmcclintock/multistatelangevin-supporting-code

Supporting data and R code for "A multistate Langevin diffusion for inferring behavior-specific habitat selection and utilization distributions" by McClintock & Lander

https://github.com/bmcclintock/multistatelangevin-supporting-code

Science Score: 26.0%

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    CITATION.cff file
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    Found codemeta.json file
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    .zenodo.json file
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    DOI references
    Found 2 DOI reference(s) in README
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    Low similarity (8.1%) to scientific vocabulary
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Repository

Supporting data and R code for "A multistate Langevin diffusion for inferring behavior-specific habitat selection and utilization distributions" by McClintock & Lander

Basic Info
  • Host: GitHub
  • Owner: bmcclintock
  • License: gpl-3.0
  • Language: R
  • Default Branch: master
  • Size: 212 MB
Statistics
  • Stars: 0
  • Watchers: 1
  • Forks: 0
  • Open Issues: 0
  • Releases: 6
Created almost 4 years ago · Last pushed over 1 year ago
Metadata Files
Readme License Support

README.md

multiStateLangevin-supporting-code

Supporting data and R code for "A multistate Langevin diffusion for inferring behavior-specific habitat selection and utilization distributions" by McClintock & Lander. The main scripts (simStudy.R, zebraAnalysis.R, and sslAnalysis.R) all rely on the Rhabit package, which is not available on CRAN. RandomFields is imported by Rhabit, but it has been removed and archived by CRAN as of 4 May 2022. Thus in order to install the Rhabit package, RandomFields and RandomFieldsUtils must be manually downloaded and installed beforehand: install.packages("RandomFieldsUtils_1.2.5.tar.gz", repos = NULL, type = "source") install.packages("RandomFields_3.3.14.tar.gz", repos = NULL, type = "source") remotes::install_github("papayoun/Rhabit@31ddf44") The scripts also depend on momentuHMM version 2.0.0 or higher: remotes::install_github("bmcclintock/momentuHMM@develop",dependencies = TRUE)

Simulation files

simStudy.R contains the simulation experiment.

Plains zebra illustration

zebraAnalysis.R contains the plains zebra analysis. All data necessary for running the script are in the data folder. Supporting scripts, including utility functions (utility.R) are in the supportingScripts folder. zebraAnalysis.RData is the saved workspace containing the results reported in the paper.

Steller seal lion illustration

sslAnalysis.R contains the Steller sea lion analysis. All data necessary for running the script are in the data folder. Supporting scripts, including model definitions (DM.R), spatial covariate processing (sslCovariates.R), and other utility functions (utility.R) are in the supportingScripts folder. sslAnalysis.RData is the saved workspace containing the results reported in the paper.

Owner

  • Name: Brett McClintock
  • Login: bmcclintock
  • Kind: user

GitHub Events

Total
  • Release event: 3
  • Push event: 2
  • Create event: 3
Last Year
  • Release event: 3
  • Push event: 2
  • Create event: 3