piezo_copulation_source_code
"Piezo-mediated mechanosensation contributes to stabilizing copulation posture and reproductive success in Drosophila males"
https://github.com/kamikouchi-lab/piezo_copulation_source_code
Science Score: 36.0%
This score indicates how likely this project is to be science-related based on various indicators:
-
○CITATION.cff file
-
✓codemeta.json file
Found codemeta.json file -
✓.zenodo.json file
Found .zenodo.json file -
○DOI references
-
✓Academic publication links
Links to: zenodo.org -
○Academic email domains
-
○Institutional organization owner
-
○JOSS paper metadata
-
○Scientific vocabulary similarity
Low similarity (1.7%) to scientific vocabulary
Last synced: 10 months ago
·
JSON representation
Repository
"Piezo-mediated mechanosensation contributes to stabilizing copulation posture and reproductive success in Drosophila males"
Basic Info
- Host: GitHub
- Owner: Kamikouchi-lab
- License: mit
- Language: Jupyter Notebook
- Default Branch: main
- Size: 3.36 GB
Statistics
- Stars: 1
- Watchers: 1
- Forks: 0
- Open Issues: 0
- Releases: 1
Created over 3 years ago
· Last pushed almost 3 years ago
Metadata Files
Readme
License
Citation
README.md
Piezo-mediated mechanosensation contributes to stabilizing copulation posture and reproductive success in Drosophila males
Figure 2C, D
- DeepLabCut model for tracking the flies position : malecopulationposture_model
- Calculating the male copulation posture : reshape_dataset.ipynb
- Plotting and statistics analysis : piezoratioand_bunsan.R
Figure 2E
- DeepLabCut model for tracking the flies position : malecopulationposture_model
- Calculating the male copulation posture and plotting : reshape_dataset.ipynb
Figure 3A
- Plotting and statistics analysis : cop_ratio.R
Figure 3B
- Plotting and statistics analysis : cop_ratio.R
Figure 3C
- Plotting and statistics analysis : cop_ratio.R
Figure 5C, H
- Plotting and statistics analysis : copulation_opt.R
Figure 5F
- DeepLabCut model for tracking the flies position : malecopulationposturemovementmodel
- Calculating the male copulation position : laseroptanalysis.ipynb
- Plotting and statistics analysis : laser_analysis.R
Figure 5G
- DeepLabCut model for tracking the flies position : malecopulationposturemovementmodel
- Calculating the male copulation position : laseroptanalysis.ipynb
- Plotting and statistics analysis : laser_analysis.R
Figure S2A-K
- DeepLabCut model for tracking the flies position : malecopulationposture_model
- Calculating the male copulation posture : reshapedataset20-30.ipynb
- Plotting and statistics : ratiographdrawing.R
Figure S3A
- Plotting and statistics : kickcopulationanalysis.R
Figure S3B
- Plotting and statistics : genitaltouchcount_analysis.R
Figure S4A
- Plotting and statistics : activity_analysis.R
Figure S4B
- Plotting and statistics : flyscaleanalysis.R
Figure S5
- Plotting and statistics : copulationmixingassay.R
Figure S7A, B
- Plotting and statistics : copulationopthead_grooming.R
Figure S9B
- Calculating the male copulation posture : laser_map.ipynb
- Plotting and statistics :laserstrengthanalysis.R
Figure S14B
- DeepLabCut model for tracking the flies position : malecopulationposture_model
- Calculating the DLC time : reshape_dataset.ipynb
- Plotting and statistics : piezoratioand_bunsan.R
Closed-optogenetic system for optogenetic assays with LED
- DeepLabCut model : copulationdetectionmodelforLED
- Bonsai script : copulationdetectLED.bonsai
- Arduino script : CreatePWMstimubonsaitoarduino_LED.ino, StandardFirmata.ino
Closed-optogenetic system for optogenetic assays with a laser
- DeepLabCut model : copulationdetectionmodelforlaser
- Bonsai script : copulationdetectlaser.bonsai
- Arduino script : CreatePWMstimubonsaitoarduino_laser.ino, StandardFirmata.ino
Owner
- Name: Kamikouchi-Lab
- Login: Kamikouchi-lab
- Kind: organization
- Website: https://www.bio.nagoya-u.ac.jp/~NC_home/index2.htm
- Repositories: 1
- Profile: https://github.com/Kamikouchi-lab