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supercon2

Staging-area for automatically collected experimental data for the SuperCon database with a curation interface with enhanced-document viewer and curation-ready interface

https://github.com/lfoppiano/supercon2

Science Score: 39.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ✓
    DOI references
    Found 8 DOI reference(s) in README
  • ○
    Academic publication links
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    Academic email domains
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    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (7.8%) to scientific vocabulary

Keywords

feedback grobid superconductors tdm training training-data
Last synced: 6 months ago · JSON representation

Repository

Staging-area for automatically collected experimental data for the SuperCon database with a curation interface with enhanced-document viewer and curation-ready interface

Basic Info
Statistics
  • Stars: 5
  • Watchers: 2
  • Forks: 0
  • Open Issues: 29
  • Releases: 7
Topics
feedback grobid superconductors tdm training training-data
Created over 4 years ago · Last pushed about 2 years ago
Metadata Files
Readme Citation

README.md

SuperCon 2

SuperCon 2 is the staging-area of SuperCon, the 'de-facto standard' database of superconductors materials. SuperCon 2, collect experimental data automatically extracted from scientific documents and provide a workflow to correct them efficiently and with high quality.

The SuperCon 2 interface is described in details here.

This repository contains:

  • The process to create the SuperCon 2 database from scratch, using Grobid Superconductor to extract materials information from large quantities of PDF.
  • SuperCon 2 curation interface and workflow application for visualising and editing material and properties extracted from superconductors-related papers.
  • The documentation related to the usage of SuperCon 2, with notes, experiments and other information, accessible here.

Reference:

@article{doi:10.1080/27660400.2023.2286219, title = {Semi-automatic staging area for high-quality structured data extraction from scientific literature}, author = {Luca Foppiano, Tomoya Mato, Kensei Terashima, Pedro Ortiz Suarez, Taku Tou, Chikako Sakai, Wei-Sheng Wang, Toshiyuki Amagasa, Yoshihiko Takano and Masashi Ishii}, year = 2023, journal = {Science and Technology of Advanced Materials: Methods}, publisher = {Taylor & Francis}, volume = {0}, number = {ja}, pages = 2286219, doi = {10.1080/27660400.2023.2286219}, url = {https://doi.org/10.1080/27660400.2023.2286219}, eprint = {https://doi.org/10.1080/27660400.2023.2286219} }

Owner

  • Name: Luca Foppiano
  • Login: lfoppiano
  • Kind: user

GitHub Events

Total
Last Year

Issues and Pull Requests

Last synced: over 1 year ago

All Time
  • Total issues: 153
  • Total pull requests: 27
  • Average time to close issues: 3 months
  • Average time to close pull requests: 16 days
  • Total issue authors: 7
  • Total pull request authors: 2
  • Average comments per issue: 1.76
  • Average comments per pull request: 1.22
  • Merged pull requests: 24
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 1
  • Pull requests: 0
  • Average time to close issues: about 3 hours
  • Average time to close pull requests: N/A
  • Issue authors: 1
  • Pull request authors: 0
  • Average comments per issue: 1.0
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
  • lfoppiano (117)
  • kensei-te (16)
  • t29mato (9)
  • ESPARZAmiren (4)
  • ChikakoSakai (3)
  • pedrobcst (3)
  • takutechnology (1)
Pull Request Authors
  • lfoppiano (18)
  • t29mato (9)
Top Labels
Issue Labels
frontend (74) implemented (55) backend (40) bug (26) documentation (17) easy (13) wontfix (10) question (9) curation (8) change in data db (7) medium (7) difficult (6) breaking change (5) enhancement (5) duplicate (3) need further clarification (3)
Pull Request Labels
backend (4) frontend (3) enhancement (2) documentation (1) breaking change (1) change in data db (1) bug (1)

Dependencies

.github/workflows/ci-build-stable.yml actions
  • actions/checkout v2 composite
  • actions/setup-python v2 composite
.github/workflows/codeql-analysis.yml actions
  • actions/checkout v2 composite
  • github/codeql-action/analyze v1 composite
  • github/codeql-action/autobuild v1 composite
  • github/codeql-action/init v1 composite
.devcontainer/Dockerfile docker
  • mcr.microsoft.com/vscode/devcontainers/python 0-${VARIANT} build
Dockerfile docker
  • python 3.10-slim build
docker-compose.yml docker
  • lfoppiano/supercon2 1.2
  • mongo latest
supercon2/static/resources/libs/MaterialDesign-Webfont-6.5.95/package.json npm
requirements.txt pypi
  • Flask ==2.3.2
  • apiflask ==1.3.1
  • deepdiff *
  • label-studio-sdk *
  • numpy *
  • openpyxl *
  • pandas *
  • pymatgen ==2023.2.28
  • pymongo ==4.4.0
  • pytest *
  • pytest-mock *
  • pytest-mongodb *
  • pyyaml *
  • requests *
  • tqdm ==4.65.0
  • waitress ==2.1.1
  • xlrd *