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mixed_meal_model_sbml

Codebase for building the SBML version of the MixedMealModel

https://github.com/computational-biology-tue/mixed_meal_model_sbml

Science Score: 26.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ○
    DOI references
  • ○
    Academic publication links
  • ○
    Academic email domains
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (5.4%) to scientific vocabulary
Last synced: 6 months ago · JSON representation

Repository

Codebase for building the SBML version of the MixedMealModel

Basic Info
  • Host: GitHub
  • Owner: Computational-Biology-TUe
  • License: apache-2.0
  • Language: Python
  • Default Branch: main
  • Size: 368 KB
Statistics
  • Stars: 1
  • Watchers: 2
  • Forks: 0
  • Open Issues: 2
  • Releases: 3
Created almost 2 years ago · Last pushed over 1 year ago
Metadata Files
Readme Changelog Contributing License Code of conduct Citation

README.dev.md

mixed_meal_model_sbml developer documentation

If you're looking for user documentation, go here.

Development install

```shell

Create a virtual environment, e.g. with

python -m venv env

activate virtual environment

source env/bin/activate

make sure to have a recent version of pip and setuptools

python -m pip install --upgrade pip setuptools

(from the project root directory)

install mixedmealmodel_sbml as an editable package

python -m pip install --no-cache-dir --editable .

install development dependencies

python -m pip install --no-cache-dir --editable .[dev] ```

Afterwards check that the install directory is present in the PATH environment variable.

Owner

  • Name: Computational Biology
  • Login: Computational-Biology-TUe
  • Kind: organization
  • Location: Netherlands

The Computational biology research group at Eindhoven University of Technology

GitHub Events

Total
  • Watch event: 1
Last Year
  • Watch event: 1

Dependencies

.github/workflows/build.yml actions
  • actions/checkout v3 composite
  • actions/setup-python v3 composite
.github/workflows/cffconvert.yml actions
  • actions/checkout v3 composite
  • citation-file-format/cffconvert-github-action 2.0.0 composite
.github/workflows/markdown-link-check.yml actions
  • actions/checkout v3 composite
  • gaurav-nelson/github-action-markdown-link-check v1 composite
pyproject.toml pypi