https://github.com/bodenmillergroup/cisi-imc_publication
Scripts for CISI-IMC publication
Science Score: 13.0%
This score indicates how likely this project is to be science-related based on various indicators:
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○CITATION.cff file
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✓codemeta.json file
Found codemeta.json file -
○.zenodo.json file
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○DOI references
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○Academic publication links
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○Academic email domains
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○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (4.4%) to scientific vocabulary
Last synced: 9 months ago
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JSON representation
Repository
Scripts for CISI-IMC publication
Basic Info
- Host: GitHub
- Owner: BodenmillerGroup
- License: mit
- Language: Jupyter Notebook
- Default Branch: main
- Size: 49.8 KB
Statistics
- Stars: 0
- Watchers: 5
- Forks: 0
- Open Issues: 0
- Releases: 0
Created over 2 years ago
· Last pushed over 2 years ago
Metadata Files
Readme
License
README.md
CISI-IMC_publication
Scripts for CISI-IMC publication
analysis
ipynb files to perform analyses demonstrated in the manuscript. First line of each file indicates which figure it corresponds to.
code
python files contaning functions used in the codes in "analysis" folder. - simulate_A: Simulating the decompression performance of barcoding matrix. - smaf: Calculating dictionary from single cell expresssion data. - utils: other functions
env
yml file to create a python environment for CISI-IMC.
report
Rmd files to produce the plots in the manuscript.
Owner
- Name: BodenmillerGroup
- Login: BodenmillerGroup
- Kind: organization
- Repositories: 83
- Profile: https://github.com/BodenmillerGroup
GitHub Events
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Last Year
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Last synced: over 1 year ago
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- Average comments per issue: 0
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- Merged pull requests: 0
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- Bot pull requests: 0
Past Year
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- Pull requests: 0
- Average time to close issues: N/A
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- Issue authors: 0
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- Average comments per issue: 0
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- Bot issues: 0
- Bot pull requests: 0