https://github.com/boernerlab/famp_rna
Software Framework for FRET assisted structural modeling of RNA
Science Score: 36.0%
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○CITATION.cff file
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✓codemeta.json file
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✓.zenodo.json file
Found .zenodo.json file -
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Links to: acs.org -
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○Scientific vocabulary similarity
Low similarity (10.8%) to scientific vocabulary
Repository
Software Framework for FRET assisted structural modeling of RNA
Basic Info
- Host: GitHub
- Owner: BoernerLab
- License: gpl-3.0
- Language: Jupyter Notebook
- Default Branch: main
- Homepage: https://boernerlab.github.io/FAMP_rna/
- Size: 208 MB
Statistics
- Stars: 1
- Watchers: 1
- Forks: 0
- Open Issues: 0
- Releases: 0
Metadata Files
README.md
The Project
This project combines different tools for modeling and simulation of RNA structures. Furthermore, functionalities were developed to efficiently analyze MD trajectories of labeled RNA. Here, the simulation of FRET experiments plays an essential role. Using the pipeline described here, RNA structures can be modeled and evaluated using smFRET experimental data.
Installation
The code can be downloaded under the green button "Code" or cloned via the terminal:
git clone https://github.com/felixErichson/FAMP_rna.git
Requirements
As a dependency of this notebook the following programms should be preinstalled. Please follow the installation instructions of the tools.
Make sure that the programms are added to the bashrc or zshrc file.
Please create an anaconda environment for this Jupyter Notebook by importing the environment.yml file.
Before you start open Pymol in your environment and install the plugins FRETraj and FRETlabel. Locate the
package with fretlabel --path and remember this path. Then open PymMol and go to Plugin -> Plugin manager -> Install
New Plugin -> Choose file ... -> and select fretlabel_gui.py, wich can be found at the path from the step bevore. The
same works for the FRETraj GUI.
Author
Felix Erichson | erichson(at)hs-mittweida.de
Owner
- Name: Börner Lab
- Login: BoernerLab
- Kind: organization
- Repositories: 2
- Profile: https://github.com/BoernerLab
GitHub Events
Total
- Release event: 1
- Push event: 6
- Public event: 1
- Create event: 1
Last Year
- Release event: 1
- Push event: 6
- Public event: 1
- Create event: 1