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Recent Releases of cytominer-database

cytominer-database - v0.3.5

Compatibility release for newer Python versions which may not be compatible with backports.tempfile.

Please note: This package is deprecated and will no longer be supported. Please use at your own risk!

What's Changed

  • Prep for new release 0.3.3 by @shntnu in https://github.com/cytomining/cytominer-database/pull/116
  • Setting version for automatically updating documentation by @gwaybio in https://github.com/cytomining/cytominer-database/pull/118
  • Add Author Tag to setup.cfg by @gwaybio in https://github.com/cytomining/cytominer-database/pull/119
  • Add back author copyright by @gwaybio in https://github.com/cytomining/cytominer-database/pull/120
  • Parquet_integration by @diskontinuum in https://github.com/cytomining/cytominer-database/pull/122
  • Create CITATION.cff by @bethac07 in https://github.com/cytomining/cytominer-database/pull/133
  • Remove backports.tempfile for Python compatibility and bump version by @d33bs in https://github.com/cytomining/cytominer-database/pull/134
  • Reconcile v0.3.5 with changes in branch 0.3.4 by @d33bs in https://github.com/cytomining/cytominer-database/pull/135

Full Changelog: https://github.com/cytomining/cytominer-database/compare/v0.3.4...v0.3.5

- Python
Published by d33bs over 1 year ago

cytominer-database - 0.3.4

Fixes a critical bug that prevents SQLite creation with large numbers of files.

- Python
Published by bethac07 almost 5 years ago

cytominer-database - 0.3.3: Bumping version to stay in sync with Test PyPi

Release Notes

  • Identical to v0.3.1. The version was bumped to stay in sync with Test PyPi, to which we had pushed newer version to fix a bug that never was.

- Python
Published by shntnu over 6 years ago

cytominer-database - 0.3.1: Fixed ingestion bug

Release Notes

  • Fixed bug that was resulting in the creation of one file per compartment #115 (introduced in 0.3.0 after the migration to sqlalchemy and pandas.read_sql)

- Python
Published by shntnu over 6 years ago

cytominer-database - Remove Deprecated Packages

Release Notes

  • Remove odo and networkx dependencies e1c40e9c39472909c369072eec21b50512bae47f
    • Now using sqlalchemy and pandas.read_sql
  • Update fixture calling in pytest b4dc573fbb5d23c929b67918475fd7f795b5e8ea
  • No longer building on apveyor 9912c20836597fcf06bd7e44490e0f5a21b93886
  • Replacing hashlib with zlib to create unique file labels 67cf2e3045ac1de92beeec8f03d3697dabd12213
  • Adding tests for missing values in sqlite files e5841a0ac7d6a4e647dd7581513302aee1616b26
  • Remove Gemnasium link in README 60e8ac73b37819f9d1c0f4b54e143fba5e1f05b8
  • Updating maintainers 9abeabdf71c6336c905053b9eeff1e4e7ffd21dd
  • Minor documentation and code style updates

- Python
Published by gwaybio almost 7 years ago

cytominer-database -

  • updated documentation
  • added support to collect/ingest data even if only image CSVs are present

- Python
Published by cells2numbers about 8 years ago

cytominer-database - 0.1.0

https://github.com/cytomining/cytominer-database/issues/86 Adds the option to skip the Image_ header prefix in the image table. This is the new default behavior. Excluding or including the Image_ header prefix can be configured on the command line with --skip-image-prefix / --no-skip-image-prefix.

- Python
Published by mcquin over 8 years ago

cytominer-database - 0.0.1

Release of 0.0.1

  • Added Windows support (in addition to OS X, Linux)
  • Multilevel commands under the cytominer-database namespace
  • Bug fixes
  • Use Python default warning levels
  • Supply a default configuration file
  • Improvements to package development, testing, and deployment including:
    • Enable PyPI deployment on Travis
    • Publishing universal wheels
    • CI for Python 2.7 and 3.6 on Linux and Windows
    • Automated builds on readthedocs

In compliance with PyPI, @shntnu is listed as the primary package author. Other authors and contributors are referenced in the contributors document.

- Python
Published by mcquin over 8 years ago

cytominer-database - 0.0.1b5

Fifth beta release of 0.0.1

  • Added Windows support (in addition to OS X, Linux)
  • Multilevel commands under the cytominer-database namespace
  • Bug fixes
  • Use Python default warning levels
  • Supply a default configuration file
  • Improvements to package development, testing, and deployment including:
    • Enable PyPI deployment on Travis
    • Publishing universal wheels
    • CI for Python 2.7 and 3.6 on Linux and Windows
    • Automated builds on readthedocs

In compliance with PyPI, @shntnu is listed as the primary package author. Other authors and contributors are referenced in the contributors document.

- Python
Published by mcquin over 8 years ago

cytominer-database - 0.0.1b3

Third beta release of 0.0.1

  • Added Windows support (in addition to OS X, Linux)
  • Multilevel commands under the cytominer-database namespace
  • Bug fixes
  • Improvements to package development, testing, and deployment including:
    • Enable PyPI deployment on Travis
    • Publishing universal wheels
    • CI for Python 2.7 and 3.6 on Linux and Windows
    • Automated builds on readthedocs

In compliance with PyPI, @shntnu has become the primary package author. Other authors and contributors are referenced in a contributors document.

- Python
Published by mcquin over 8 years ago

cytominer-database - 0.0.1b2

Second beta release of 0.0.1

  • Added Windows support (in addition to OS X, Linux)
  • Multilevel commands under the cytominer-database namespace
  • Bug fixes
  • Improvements to package development, testing, and deployment including:
    • Enable PyPI deployment on Travis
    • Publishing universal wheels
    • CI for Python 2.7 and 3.6 on Linux and Windows

In compliance with PyPI, @shntnu has become the primary package author. Other authors and contributors are referenced in a contributors document.

- Python
Published by mcquin over 8 years ago

cytominer-database - 0.0.1b1

First beta release of 0.0.1

  • Added Windows support (in addition to OS X, Linux)
  • Multilevel commands under the cytominer-database namespace
  • Bug fixes
  • Improvements to package development, testing, and deployment including:
    • deployment to PyPI is enabled in Travis
    • CI for Python 2.7 and 3.6 on Linux and Windows

- Python
Published by mcquin over 8 years ago

cytominer-database - 0.0.0

cytomining-database provides mechanisms to import CSV files generated in a morphological profiling experiment into a database backend.

- Python
Published by shntnu over 9 years ago