uc-ces
Modelling code for cultural ecosystem services pDT within BioDT
Science Score: 49.0%
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○CITATION.cff file
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✓codemeta.json file
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✓.zenodo.json file
Found .zenodo.json file -
✓DOI references
Found 2 DOI reference(s) in README -
✓Academic publication links
Links to: zenodo.org -
○Academic email domains
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○Scientific vocabulary similarity
Low similarity (9.6%) to scientific vocabulary
Repository
Modelling code for cultural ecosystem services pDT within BioDT
Basic Info
- Host: GitHub
- Owner: BioDT
- License: mit
- Language: R
- Default Branch: main
- Homepage: https://wiki.eduuni.fi/display/cscRDIcollaboration/4.1.1.2.1+Cultural+Ecosystem+Services
- Size: 32.5 MB
Statistics
- Stars: 2
- Watchers: 3
- Forks: 1
- Open Issues: 16
- Releases: 0
Metadata Files
readme.md
Models for Cultural Ecosystem Services Prototype Digital Twin
This GitHub repository contains the model code required to run models to deliver the cultural ecosystem services pDT (previously 'use-case'). Readme last updated 28th July 2023.
For more general background about the pDT then please visit the wiki page: https://wiki.eduuni.fi/display/cscRDIcollaboration/4.1.1.2.1+Cultural+Ecosystem+Services
Please use the GitHub issues to discuss any development: https://github.com/BioDT/uc-ces/issues
The diagrams folder contains any diagrams which can be edited with https://app.diagrams.net/
Digital Twin components
The Digital Twin comprises of two components: the recreation potential model and the biodiversity model. More detail about each model can be found on their corresponding readme within the repository:
- https://github.com/BioDT/uc-ces/tree/main/biodiversity_model
- https://github.com/BioDT/uc-ces/tree/main/recreation_model
Both models are :
- implemented in R
- configured to be run from command line
- developed to run in a container, either Docker (if running on a local computing device) or singularity (also known as apptainer) when running on HPC (https://docs.lumi-supercomputer.eu/software/containers/singularity/)
The user interface for the pDT will be developed as a module within the BioDT Shiny app (https://github.com/BioDT/biodt-shiny)
Running the models on LUMI
Note that I (Simon) usually have to re-add my ssh key to the agent every time I log into LUMI with:
eval "$(ssh-agent -s)"
ssh-add ~/.ssh/lumi-simrol
Owner
- Name: BioDT
- Login: BioDT
- Kind: organization
- Website: https://biodt.eu
- Twitter: BiodiversityDT
- Repositories: 1
- Profile: https://github.com/BioDT
Horizon EU Biodiversity Digital Twin
GitHub Events
Total
- Release event: 1
- Watch event: 1
- Member event: 1
- Push event: 10
- Create event: 1
Last Year
- Release event: 1
- Watch event: 1
- Member event: 1
- Push event: 10
- Create event: 1