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Recent Releases of https://github.com/bowang-lab/scgpt

https://github.com/bowang-lab/scgpt - scGPT 0.2.4

Full Changelog: https://github.com/bowang-lab/scGPT/compare/v0.2.2...v0.2.4

- Jupyter Notebook
Published by subercui 11 months ago

https://github.com/bowang-lab/scgpt - scGPT 0.2.2

What's Changed

  • [docs] continual pretrained scGPT zero-shot integration tutorial by @Kuan-Pang in https://github.com/bowang-lab/scGPT/pull/142
  • Update perturb with affine decoder by @subercui in https://github.com/bowang-lab/scGPT/pull/205
  • Relax the dependency of python version to <4.

Full Changelog: https://github.com/bowang-lab/scGPT/compare/v0.2.1...v0.2.2

- Jupyter Notebook
Published by subercui 11 months ago

https://github.com/bowang-lab/scgpt - scGPT 0.2.1

What's Changed

  • [Docs] Zero-shot tutorials by @Kuan-Pang in https://github.com/bowang-lab/scGPT/pull/130
  • Support pytorch 2.1 by @subercui in https://github.com/bowang-lab/scGPT/pull/136
  • :wrench: update value counts for predictions, fix #135 by @subercui in https://github.com/bowang-lab/scGPT/pull/137
  • :art: Add support to run on google colab in zero shot notebooks by @subercui in https://github.com/bowang-lab/scGPT/pull/138
  • Fix missing batch_first attribute by @moritzschaefer in https://github.com/bowang-lab/scGPT/pull/133

New Contributors

  • @Kuan-Pang made their first contribution in https://github.com/bowang-lab/scGPT/pull/130
  • @moritzschaefer made their first contribution in https://github.com/bowang-lab/scGPT/pull/133

Full Changelog: https://github.com/bowang-lab/scGPT/compare/v0.1.9...v0.2.1

- Jupyter Notebook
Published by subercui about 2 years ago

https://github.com/bowang-lab/scgpt - scGPT 0.1.9

What's Changed

  • Bugfix remove celltypekey from embed data by @subercui in https://github.com/bowang-lab/scGPT/pull/114

Full Changelog: https://github.com/bowang-lab/scGPT/compare/v0.1.8...v0.1.9

- Jupyter Notebook
Published by subercui over 2 years ago

https://github.com/bowang-lab/scgpt - scGPT 0.1.8

Full Changelog: https://github.com/bowang-lab/scGPT/compare/v0.1.6...v0.1.8

- Jupyter Notebook
Published by subercui over 2 years ago

https://github.com/bowang-lab/scgpt - scGPT 0.1.6

Optimize installation instructions and dependencies

Full Changelog: https://github.com/bowang-lab/scGPT/compare/v0.1.5...v0.1.6

- Jupyter Notebook
Published by subercui over 2 years ago

https://github.com/bowang-lab/scgpt - scGPT 0.1.5

What's Changed

  • Reference mapping by @subercui in https://github.com/bowang-lab/scGPT/pull/77

Full Changelog: https://github.com/bowang-lab/scGPT/compare/v0.1.3...v0.1.5

- Jupyter Notebook
Published by subercui over 2 years ago

https://github.com/bowang-lab/scgpt - scGPT 0.1.3

What's Changed

  • Dev by @subercui in https://github.com/bowang-lab/scGPT/pull/23
  • tutorial update by @subercui in https://github.com/bowang-lab/scGPT/pull/24
  • updated corpus download doc by @subercui in https://github.com/bowang-lab/scGPT/pull/63

Contributors

  • @subercui
  • @Kuan-Pang made their first contribution in https://github.com/bowang-lab/scGPT/pull/63

Full Changelog: https://github.com/bowang-lab/scGPT/compare/v0.1.2...v0.1.3

- Jupyter Notebook
Published by subercui over 2 years ago

https://github.com/bowang-lab/scgpt - scGPT 0.1.2

- Jupyter Notebook
Published by subercui almost 3 years ago