https://github.com/boydorr/pemba_rabies
Science Score: 13.0%
This score indicates how likely this project is to be science-related based on various indicators:
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○CITATION.cff file
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✓codemeta.json file
Found codemeta.json file -
○.zenodo.json file
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○DOI references
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○Academic publication links
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○Scientific vocabulary similarity
Low similarity (3.5%) to scientific vocabulary
Repository
Basic Info
- Host: GitHub
- Owner: boydorr
- License: mit
- Language: R
- Default Branch: main
- Size: 70.5 MB
Statistics
- Stars: 0
- Watchers: 4
- Forks: 0
- Open Issues: 0
- Releases: 1
Metadata Files
README.md
Integrating contact tracing and whole-genome sequencing to track the elimination of dog-mediated rabies: an observational and genomic study
Authors: Kennedy Lushasi, Kirstyn Brunker, Malavika Rajeev, Elaine A Ferguson, Gurdeep Jaswant, Laurie Baker, Roman Biek, Joel Changalucha, Sarah Cleaveland, Anna Czupryna, Anthony R Fooks, Nicodemus Govella, Daniel T Haydon, Paul Johnson, Rudovick Kazwala✢, Tiziana Lembo, Denise Marston, Msanif Masoud, Mathew Maziku, Eberhard Mbunda✢, Geofrey Mchau, Ally Z Mohamed, Emmanuel Mpolya, Chanasa Ngeleja, Kija Ng’abhi, Hesron Nonga, Khasim Omar, Kristyna Rysava, Maganga Sambo, Lwitiko Sikana, Rachel Steenson & Katie Hampson. * Equal contributions, ✢ Deceased
This repository contains all the code and de-identified data in this study.
Geographic masking was used to de-identify the spatial data on rabies transmission (mostly localized to households of either dog owners or persons bitten by rabid animals), by jittering XY locations within a 1km radius. Running the transmission tree code on these jittered data will therefore not generate precisely the same inferred progenitors as from the raw data because the very localized spatial structure is masked. The resulting (transmission) consensus trees are provided from the original raw data.
For more information: katie.hampson@glasgow.ac.uk
Owner
- Name: Boyd Orr
- Login: boydorr
- Kind: organization
- Location: Glasgow, UK
- Website: http://www.gla.ac.uk/boydorr
- Repositories: 28
- Profile: https://github.com/boydorr
Boyd Orr Centre for Population and Ecosystem Health, University of Glasgow
GitHub Events
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