https://github.com/bozenne/lavasearch2

Tools for model specification in the latent variable framework (add-on for the lava package)

https://github.com/bozenne/lavasearch2

Science Score: 23.0%

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    3 of 6 committers (50.0%) from academic institutions
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    Low similarity (16.9%) to scientific vocabulary

Keywords

inference latent-variable-models r statistics

Keywords from Contributors

generalized-pairwise-comparisons non-parametric
Last synced: 5 months ago · JSON representation

Repository

Tools for model specification in the latent variable framework (add-on for the lava package)

Basic Info
  • Host: GitHub
  • Owner: bozenne
  • License: gpl-3.0
  • Language: R
  • Default Branch: master
  • Size: 2.52 MB
Statistics
  • Stars: 0
  • Watchers: 1
  • Forks: 1
  • Open Issues: 0
  • Releases: 0
Topics
inference latent-variable-models r statistics
Created over 8 years ago · Last pushed over 1 year ago
Metadata Files
Readme Changelog License

README.org

#+BEGIN_HTML
CRAN version
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Build status
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* lavaSeach2

*lavaSearch2* is a package for the R software
(https://www.r-project.org/) containing diagnostic and inference tools
for Latent Variable Models (LVM) estimated by maximum likelihood
(ML). It is built upon the *lava* package (see
[[https://github.com/kkholst/lava]]): the *lava* package is used to define
and estimate LVM. While *lava* can also be used to perform diagnostics
and inference, *lavaSearch2* improves some of the existing tools
in *lava*:
- Better control of the type 1 error rate when performing inference
  with small samples. The new methods =summary2= and =compare2=
  replace the =summary= and =compare= functions that performs,
  respectively, univariate and multivariate Wald tests. The new
  methods are also applicable to specific =gls= and =lme= models
  (*nlme* package).
- Better control of the type 1 error rate when adjusting for multiple
  comparisons with small samples (via the *multcomp*
  package). Compared to =glht=, the function =glht2= propagates small
  sample corrections to *multcomp*.
- Better detection of local dependencies that are not included in the
  LVM. The new method =modelsearch2= improves the =modelsearch= method
  by providing p-values adjusted for multiple comparisons. 

_Limitations_: *lavaSearch2* has been design for Gaussian linear
latent variable models. This means that it may not work / give valid
results:
- in presence of censored or binary outcomes.
- with stratified models (i.e. object of class =multigroup=).

* Installation of lavaSearch2
You can download and install the latest released version of the
software (CRAN version) using:
#+BEGIN_SRC R :exports both :eval never
install.packages("lavaSearch2")
#+END_SRC

For getting the most recent developments (if any!), you can download
and install the latest stable version of the software (Github version)
using:
#+BEGIN_SRC R :exports both :eval never
devtools::install_github("bozenne/lavaSearch2")
#+END_SRC


* Functionalities

See the vignette "Overview of the functionalities of the package
lavaSearch2" in [[./vignettes/overview.pdf]]

Owner

  • Name: Ozenne
  • Login: bozenne
  • Kind: user
  • Location: Copenhagen

I'm a bio-statistician; you will find on my Github R packages implementing statistical developments, code related to articles, and setting for emacs.

GitHub Events

Total
Last Year

Committers

Last synced: over 2 years ago

All Time
  • Total Commits: 312
  • Total Committers: 6
  • Avg Commits per committer: 52.0
  • Development Distribution Score (DDS): 0.228
Past Year
  • Commits: 3
  • Committers: 2
  • Avg Commits per committer: 1.5
  • Development Distribution Score (DDS): 0.333
Top Committers
Name Email Commits
Brice Maxime Hugues Ozenne h****2@s****k 241
bozenne b****z@s****k 40
Brice Ozenne b****e@o****r 14
Brice Maxime Hugues Ozenne h****2@k****k 9
Brice Ozenne b****e@b****e 6
bozenne b****e@g****m 2
Committer Domains (Top 20 + Academic)

Issues and Pull Requests

Last synced: 6 months ago

All Time
  • Total issues: 1
  • Total pull requests: 1
  • Average time to close issues: 2 days
  • Average time to close pull requests: about 2 months
  • Total issue authors: 1
  • Total pull request authors: 1
  • Average comments per issue: 1.0
  • Average comments per pull request: 0.0
  • Merged pull requests: 1
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 0
  • Pull requests: 0
  • Average time to close issues: N/A
  • Average time to close pull requests: N/A
  • Issue authors: 0
  • Pull request authors: 0
  • Average comments per issue: 0
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
Top Authors
Issue Authors
  • stueller (1)
Pull Request Authors
  • kkholst (2)
Top Labels
Issue Labels
Pull Request Labels

Dependencies

DESCRIPTION cran
  • R >= 2.10 depends
  • ggplot2 * depends
  • lava >= 1.6.4 depends
  • MASS * imports
  • Matrix * imports
  • Rcpp * imports
  • abind * imports
  • doParallel * imports
  • methods * imports
  • multcomp * imports
  • mvtnorm * imports
  • nlme * imports
  • parallel * imports
  • reshape2 * imports
  • sandwich * imports
  • stats * imports
  • utils * imports
  • R.rsp * suggests
  • clubSandwich * suggests
  • data.table * suggests
  • emmeans * suggests
  • foreach * suggests
  • lme4 * suggests
  • lmerTest * suggests
  • numDeriv * suggests
  • pbapply * suggests
  • pbkrtest * suggests
  • riskRegression * suggests
  • survival * suggests
  • testthat * suggests
.github/workflows/r.yml actions
  • actions/checkout v3 composite
  • r-lib/actions/setup-r v2 composite
  • r-lib/actions/setup-tinytex v2 composite