https://github.com/bozenne/lavasearch2
Tools for model specification in the latent variable framework (add-on for the lava package)
Science Score: 23.0%
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○CITATION.cff file
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○.zenodo.json file
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3 of 6 committers (50.0%) from academic institutions -
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○Scientific vocabulary similarity
Low similarity (16.9%) to scientific vocabulary
Keywords
inference
latent-variable-models
r
statistics
Keywords from Contributors
generalized-pairwise-comparisons
non-parametric
Last synced: 5 months ago
·
JSON representation
Repository
Tools for model specification in the latent variable framework (add-on for the lava package)
Basic Info
- Host: GitHub
- Owner: bozenne
- License: gpl-3.0
- Language: R
- Default Branch: master
- Size: 2.52 MB
Statistics
- Stars: 0
- Watchers: 1
- Forks: 1
- Open Issues: 0
- Releases: 0
Topics
inference
latent-variable-models
r
statistics
Created over 8 years ago
· Last pushed over 1 year ago
Metadata Files
Readme
Changelog
License
README.org
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#+END_HTML * lavaSeach2 *lavaSearch2* is a package for the R software (https://www.r-project.org/) containing diagnostic and inference tools for Latent Variable Models (LVM) estimated by maximum likelihood (ML). It is built upon the *lava* package (see [[https://github.com/kkholst/lava]]): the *lava* package is used to define and estimate LVM. While *lava* can also be used to perform diagnostics and inference, *lavaSearch2* improves some of the existing tools in *lava*: - Better control of the type 1 error rate when performing inference with small samples. The new methods =summary2= and =compare2= replace the =summary= and =compare= functions that performs, respectively, univariate and multivariate Wald tests. The new methods are also applicable to specific =gls= and =lme= models (*nlme* package). - Better control of the type 1 error rate when adjusting for multiple comparisons with small samples (via the *multcomp* package). Compared to =glht=, the function =glht2= propagates small sample corrections to *multcomp*. - Better detection of local dependencies that are not included in the LVM. The new method =modelsearch2= improves the =modelsearch= method by providing p-values adjusted for multiple comparisons. _Limitations_: *lavaSearch2* has been design for Gaussian linear latent variable models. This means that it may not work / give valid results: - in presence of censored or binary outcomes. - with stratified models (i.e. object of class =multigroup=). * Installation of lavaSearch2 You can download and install the latest released version of the software (CRAN version) using: #+BEGIN_SRC R :exports both :eval never install.packages("lavaSearch2") #+END_SRC For getting the most recent developments (if any!), you can download and install the latest stable version of the software (Github version) using: #+BEGIN_SRC R :exports both :eval never devtools::install_github("bozenne/lavaSearch2") #+END_SRC * Functionalities See the vignette "Overview of the functionalities of the package lavaSearch2" in [[./vignettes/overview.pdf]]
Owner
- Name: Ozenne
- Login: bozenne
- Kind: user
- Location: Copenhagen
- Website: https://bozenne.github.io/
- Repositories: 5
- Profile: https://github.com/bozenne
I'm a bio-statistician; you will find on my Github R packages implementing statistical developments, code related to articles, and setting for emacs.
GitHub Events
Total
Last Year
Committers
Last synced: over 2 years ago
Top Committers
| Name | Commits | |
|---|---|---|
| Brice Maxime Hugues Ozenne | h****2@s****k | 241 |
| bozenne | b****z@s****k | 40 |
| Brice Ozenne | b****e@o****r | 14 |
| Brice Maxime Hugues Ozenne | h****2@k****k | 9 |
| Brice Ozenne | b****e@b****e | 6 |
| bozenne | b****e@g****m | 2 |
Committer Domains (Top 20 + Academic)
Issues and Pull Requests
Last synced: 6 months ago
All Time
- Total issues: 1
- Total pull requests: 1
- Average time to close issues: 2 days
- Average time to close pull requests: about 2 months
- Total issue authors: 1
- Total pull request authors: 1
- Average comments per issue: 1.0
- Average comments per pull request: 0.0
- Merged pull requests: 1
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 0
- Pull requests: 0
- Average time to close issues: N/A
- Average time to close pull requests: N/A
- Issue authors: 0
- Pull request authors: 0
- Average comments per issue: 0
- Average comments per pull request: 0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
- stueller (1)
Pull Request Authors
- kkholst (2)
Top Labels
Issue Labels
Pull Request Labels
Dependencies
DESCRIPTION
cran
- R >= 2.10 depends
- ggplot2 * depends
- lava >= 1.6.4 depends
- MASS * imports
- Matrix * imports
- Rcpp * imports
- abind * imports
- doParallel * imports
- methods * imports
- multcomp * imports
- mvtnorm * imports
- nlme * imports
- parallel * imports
- reshape2 * imports
- sandwich * imports
- stats * imports
- utils * imports
- R.rsp * suggests
- clubSandwich * suggests
- data.table * suggests
- emmeans * suggests
- foreach * suggests
- lme4 * suggests
- lmerTest * suggests
- numDeriv * suggests
- pbapply * suggests
- pbkrtest * suggests
- riskRegression * suggests
- survival * suggests
- testthat * suggests
.github/workflows/r.yml
actions
- actions/checkout v3 composite
- r-lib/actions/setup-r v2 composite
- r-lib/actions/setup-tinytex v2 composite