Data

Tools

Indexes

Applications

Experiments

Open Source Science

https://github.com/bozenne/article-predictionnp1bd3

Code and simulation study for predicting treatment response to SSRI

https://github.com/bozenne/article-predictionnp1bd3

Science Score: 36.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ○
    DOI references
  • ○
    Academic publication links
  • ✓
    Committers with academic emails
    1 of 2 committers (50.0%) from academic institutions
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (2.4%) to scientific vocabulary
Last synced: 10 months ago · JSON representation

Repository

Code and simulation study for predicting treatment response to SSRI

Basic Info
  • Host: GitHub
  • Owner: bozenne
  • Language: R
  • Default Branch: master
  • Size: 67.9 MB
Statistics
  • Stars: 0
  • Watchers: 1
  • Forks: 0
  • Open Issues: 0
  • Releases: 0
Created almost 5 years ago · Last pushed almost 4 years ago
Metadata Files
Readme

README.org 


* Commands to run analyses

*Path*: cd ucph/hdir/SundKonsolidering_BioStatHome/Cluster/BrainDrug-WP3/

** Clean
rm -r ./output/analysis-predictionCC-w4/*
rm -r ./results/analysis-predictionCC-w4/*

rm -r ./output/analysis-predictionCC-w8/*
rm -r ./rqesults/analysis-predictionCC-w8/*

rm -r ./output/analysis-predictionCC-w12/*
rm -r ./results/analysis-predictionCC-w12/*

rm -r ./output/analysis-predictionCC-traj/*
rm -r ./results/analysis-predictionCC-traj/*


rm -r ./output/analysis-predictionNA-w4/*
rm -r ./results/analysis-predictionNA-w4/*

rm -r ./output/analysis-predictionNA-w8/*
rm -r ./results/analysis-predictionNA-w8/*

rm -r ./output/analysis-predictionNA-w12/*
rm -r ./results/analysis-predictionNA-w12/*

rm -r ./output/analysis-predictionNA-traj/*
rm -r ./results/analysis-predictionNA-traj/*


** Run scripts (slurm)
sbatch SUBM_analysis-predictionCC-w4.slurm
sbatch SUBM_analysis-predictionCC-w8.slurm
sbatch SUBM_analysis-predictionCC-w12.slurm
sbatch SUBM_analysis-predictionCC-traj.slurm

sbatch SUBM_analysis-predictionNA-w4.slurm
sbatch SUBM_analysis-predictionNA-w8.slurm
sbatch SUBM_analysis-predictionNA-w12.slurm
sbatch SUBM_analysis-predictionNA-traj.slurm


** Run scripts (BATCH)
R CMD BATCH --vanilla code-data-analysis/analysis-test.R output/analysis-test/R-CMD-BATCH-1.Rout &

R CMD BATCH --vanilla code-data-analysis/analysis-predictionCC-w4.R output/analysis-predictionCC-w4/R-CMD-BATCH-1.Rout &
R CMD BATCH --vanilla code-data-analysis/analysis-predictionCC-w8.R output/analysis-predictionCC-w8/R-CMD-BATCH-1.Rout &
R CMD BATCH --vanilla code-data-analysis/analysis-predictionCC-w12.R output/analysis-predictionCC-w12/R-CMD-BATCH-1.Rout &
R CMD BATCH --vanilla code-data-analysis/analysis-predictionCC-traj.R output/analysis-predictionCC-traj/R-CMD-BATCH-1.Rout &

R CMD BATCH --vanilla code-data-analysis/analysis-predictionNA-w4.R output/analysis-predictionCC-w4/R-CMD-BATCH-1.Rout &
R CMD BATCH --vanilla code-data-analysis/analysis-predictionNA-w8.R output/analysis-predictionCC-w8/R-CMD-BATCH-1.Rout &
R CMD BATCH --vanilla code-data-analysis/analysis-predictionNA-w12.R output/analysis-predictionCC-w12/R-CMD-BATCH-1.Rout &
R CMD BATCH --vanilla code-data-analysis/analysis-predictionNA-traj.R output/analysis-predictionCC-traj/R-CMD-BATCH-1.Rout &

Owner

  • Name: Ozenne
  • Login: bozenne
  • Kind: user
  • Location: Copenhagen

I'm a bio-statistician; you will find on my Github R packages implementing statistical developments, code related to articles, and setting for emacs.

GitHub Events

Total
Last Year

Committers

Last synced: over 1 year ago

All Time
  • Total Commits: 16
  • Total Committers: 2
  • Avg Commits per committer: 8.0
  • Development Distribution Score (DDS): 0.188
Past Year
  • Commits: 0
  • Committers: 0
  • Avg Commits per committer: 0.0
  • Development Distribution Score (DDS): 0.0
Top Committers
Name Email Commits
Brice Maxime Hugues Ozenne h****2@k****k 13
Brice Ozenne b****e@b****e 3
Committer Domains (Top 20 + Academic)
briceozenne-pc76.home: 1 ku.dk: 1

Issues and Pull Requests

Last synced: about 1 year ago

All Time
  • Total issues: 0
  • Total pull requests: 0
  • Average time to close issues: N/A
  • Average time to close pull requests: N/A
  • Total issue authors: 0
  • Total pull request authors: 0
  • Average comments per issue: 0
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 0
  • Pull requests: 0
  • Average time to close issues: N/A
  • Average time to close pull requests: N/A
  • Issue authors: 0
  • Pull request authors: 0
  • Average comments per issue: 0
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
Pull Request Authors
Top Labels
Issue Labels
Pull Request Labels