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https://github.com/bozenne/article-netbenefit-correction

Code and software for the article "Correcting the bias of the net benefit estimator due to right-censored observations" published in biometrical (link: https://doi.org/10.1002/bimj.202000001 ).

https://github.com/bozenne/article-netbenefit-correction

Science Score: 49.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ✓
    DOI references
    Found 2 DOI reference(s) in README
  • ○
    Academic publication links
  • ✓
    Committers with academic emails
    1 of 3 committers (33.3%) from academic institutions
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (9.7%) to scientific vocabulary

Keywords from Contributors

generalized-pairwise-comparisons non-parametric inference latent-variable-models
Last synced: 6 months ago · JSON representation

Repository

Code and software for the article "Correcting the bias of the net benefit estimator due to right-censored observations" published in biometrical (link: https://doi.org/10.1002/bimj.202000001 ).

Basic Info
  • Host: GitHub
  • Owner: bozenne
  • Language: R
  • Default Branch: master
  • Homepage:
  • Size: 8.28 MB
Statistics
  • Stars: 0
  • Watchers: 1
  • Forks: 0
  • Open Issues: 0
  • Releases: 0
Created almost 6 years ago · Last pushed over 4 years ago
Metadata Files
Readme

README.org 

This directory contains the R code used to generate the results presented in the article ‘Correcting the bias of the net benefit estimator due to right-censored observations’ published in biometrical (2021, link:  https://doi.org/10.1002/bimj.202000001).

* Content of the folder
The infra structure of the empirical studies presented in the
manuscript is organized as follow:
- *the BATCH files* define the simulation studies. 

- *the BUILD file* gather the results of the various simulations exports
  them in the =Results= directory (files =dtS-scenarioX.rds=).

- *the ANALYSIS files* contains the code used to perform the analyses
  of the two illustrative datasets.

- *the figure files* produces figure 1 of the main article and figures
  A-E of the supplementary material.

- *the table files* produces table 3-5 of the main article.

- *the software directory* contains the BuyseTest package used for the
  simulations and data analysis.

- *the SM file* contains the code to reproduce the calculation done in
  supplementary material of the expected value of the net benefit in
  scenario 3 and 4.

- *the figure folder* contains the figures generated by the figure
  files in pdf and png format.

* R and package versions

#+BEGIN_SRC R :exports both :results output :session *R* :cache no
library(BuyseTest)
sessionInfo()
#+END_SRC

#+RESULTS:
#+begin_example
Loading required package: Rcpp
BuyseTest version 2.2.0
R version 4.0.2 (2020-06-22)
Platform: x86_64-w64-mingw32/x64 (64-bit)
Running under: Windows 7 x64 (build 7601) Service Pack 1

Matrix products: default

locale:
[1] LC_COLLATE=Danish_Denmark.1252  LC_CTYPE=Danish_Denmark.1252    LC_MONETARY=Danish_Denmark.1252
[4] LC_NUMERIC=C                    LC_TIME=Danish_Denmark.1252    

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
[1] BuyseTest_2.2.0 Rcpp_1.0.5     

loaded via a namespace (and not attached):
 [1] compiler_4.0.2     Matrix_1.2-18      parallel_4.0.2     survival_3.1-12    prodlim_2019.11.13 splines_4.0.2     
 [7] grid_4.0.2         data.table_1.13.0  lava_1.6.7         stats4_4.0.2       lattice_0.20-41
#+end_example

Owner

  • Name: Ozenne
  • Login: bozenne
  • Kind: user
  • Location: Copenhagen

I'm a bio-statistician; you will find on my Github R packages implementing statistical developments, code related to articles, and setting for emacs.

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Brice Ozenne b****e@o****r 9
Brice Maxime Hugues Ozenne h****2@s****k 6
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