https://github.com/braceal/bio_ai_agent_genslm_example
GenSLM sequence generation example to be incorporated into agentic workflows
Science Score: 26.0%
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○CITATION.cff file
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✓codemeta.json file
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✓.zenodo.json file
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○Scientific vocabulary similarity
Low similarity (3.3%) to scientific vocabulary
Repository
GenSLM sequence generation example to be incorporated into agentic workflows
Basic Info
- Host: GitHub
- Owner: braceal
- Language: Python
- Default Branch: main
- Size: 143 KB
Statistics
- Stars: 0
- Watchers: 0
- Forks: 0
- Open Issues: 0
- Releases: 0
Metadata Files
README.md
bioaiagentgenslmexample
GenSLM sequence generation example to be incorporated into agentic workflows
Install GenSLM on aurora
``` module load frameworks module load tmux
pip install levenshtein
pip install git+https://github.com/ramanathanlab/genslm ```
Generate Sequences
cd example
python generate.py
python compute_similarity.py
I forced to use CPU in generate.util.py line 18 and it takes 1min to generate 10 seqs from a prompt. Using XPU will cause OOM when generate 10 seqs at once: model.model.generate(..., num_outputs = 10)
Owner
- Name: Alex Brace
- Login: braceal
- Kind: user
- Company: University of Chicago
- Repositories: 11
- Profile: https://github.com/braceal
GitHub Events
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- Member event: 1
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- Fork event: 1
- Create event: 2
Last Year
- Member event: 1
- Push event: 2
- Fork event: 1
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