https://github.com/brain-image-library/py-brain-sdk
A Python package designed for seamless integration with the Brain Image Library APIs, facilitating efficient retrieval and manipulation of valuable neuroscience data.
Science Score: 26.0%
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○CITATION.cff file
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✓codemeta.json file
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✓.zenodo.json file
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○Scientific vocabulary similarity
Low similarity (9.3%) to scientific vocabulary
Repository
A Python package designed for seamless integration with the Brain Image Library APIs, facilitating efficient retrieval and manipulation of valuable neuroscience data.
Basic Info
- Host: GitHub
- Owner: brain-image-library
- License: gpl-3.0
- Language: Jupyter Notebook
- Default Branch: main
- Size: 139 KB
Statistics
- Stars: 0
- Watchers: 3
- Forks: 0
- Open Issues: 0
- Releases: 0
Metadata Files
README.md
py-brain-sdk
py-brain-sdk is a Python library that simplifies interaction with the Brain Image Library (BIL), a national public resource for neuroscience research. BIL provides access to petabyte-scale brain microscopy datasets, including whole and partial brain images, neuron morphologies, connectivity data, and spatial transcriptomics. This SDK enables researchers, data scientists, and developers to programmatically query, download, and analyze BIL datasets, leveraging its APIs and integrated analysis ecosystem.
With py-brain-sdk, you can
- Search and retrieve brain imaging datasets and metadata.
- Download specific image files or subsets of large datasets.
- Interface with BIL’s visualization and computational tools.
This SDK is designed to streamline workflows for neuroscience research, making it easier to integrate BIL’s vast resources into your Python projects.
Copyright © 2020-2025 Pittsburgh Supercomputing Center. All Rights Reserved.
The Biomedical Applications Group at the Pittsburgh Supercomputing Center in the Mellon College of Science at Carnegie Mellon University.
Owner
- Name: Brain Image Library
- Login: brain-image-library
- Kind: organization
- Email: bil-support@psc.edu
- Repositories: 3
- Profile: https://github.com/brain-image-library
GitHub Events
Total
- Member event: 2
- Push event: 20
Last Year
- Member event: 2
- Push event: 20
Dependencies
- humanize *
- pandas *
- python-magic *
- requests *
- tabulate *
- black * development
- humanize *
- pandas *
- python-magic *
- requests *
- scholarly *
- tabulate *
- tqdm *
- actions/checkout v3 composite
- actions/setup-python v4 composite